Gene detail

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Gene detail information of Glyur000577s00027236.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11110.1	0	SPA1-related 2
NR	XP_006590495.1	0	PREDICTED: protein SPA1-RELATED 2-like [Glycine max]
COG	YP_007155721.1	2.00E-22	WD-40 repeat-containing protein [Anabaena cylindrica PCC 7122]
Swissprot	tr\|Q9T014\|SPA2_ARATH	0	Protein SPA1-RELATED 2
trEMBL	tr\|K7LML1\|K7LML1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G02110.2}

Sequence

Transcript Sequence

>Glyur000577s00027236.1
CAACTTGCGAGTTGGTATCGTGAGAGCGTGTGTTGTTGCTTCCCCACCCTTTTCCTCNTCTTCTTCTATATAACTTTTTACTTTACACACCGACTTGCAGTTACAGAAAAGAATCGTCTTCATTTCTACTTTATGTGTTGATTGCTAAATTTGTTATGGTGGATATGGAACCTACGTGACTGGTGAGGTTAAAACTTAAAGCTACGGCATGGATGGAGAATTGGTTGATGAGGCAACCCCATTAGAGGTTGCTGAGGATTCACAGCGCCAGAGAAAAGAGGATGATGAGTATTCACCCAACAGGGAAAGCCGAAGATTTTCCCAAGAAGTTTTTATACCTGTGAAGCAGGGCCAGGACTACTCCCAGATATCACCAAGGGCATATGAAGACATTCTACATGGCAAAAATGTAGTCAAAGCAATCAGCGATGCAGCTACATCACAACATCCTCGCAGAAGCCTTTTTATGGACGATGCTGGTGTAACGGTTGAAGAACTAACGGTAAAAAGTTACAATGGCTCGAGCTTAGATATTGGTACATCAAGCAACCGAGTGCACTTGTACAATCAGCAGAAACATTGGCAGAATCTTTATCAGCTAGCAAATAATTCTGGGATTGGAAATTCACTAAGCGATATTGGGCAGAGAAATAGTGGCCAGGCTGCATCTAGTGCTTGGCAGGATATTGGATCCACATCCTTCCCGGAGCTGTTAGCTAGAAAATCACTCAGCGATGGTCAGAGCAATGTCGTGGAACACTTGGTAGATGCTGAAAGTAAAGAGGGTGAAGGTGATGTTCATGGAGGAATACGGACAAAGATCATATCCAAATCAGGATTTGCCGAGTATTTTATTAAAAATACACTGAAGGGTAAAGGTACTGTATGCAGAGGTCCATCTTCTGATGGCTTCTTTGTTCAGCCTAGAGAGCAGAATCAGACAAAGGCAGGCAGCGATGCAGATCAGAATCAGATGAAGACTGGCATTGGCACAGAGCAGAATCTGATGAAGACTGGCATTGGCAAAAATAAGAATAAGATGAAGACTGGCATTGTAACAGGCCAGAAACAGATGAAGACTGGTTTTGGTACTCAGTCAAACTCTAATCTATCAGGGAACTATAGTTCCAAAACTGCAAAGTTTCCCTCTTATAGTGATGCTATGCCTAGATCTGGCAGGTCTGAACGTGATGGTGTGACTTTGAGAGAATGGTTGAAATCTGGGCACCACAAAGCAAGCAAAGTGGAAAGTTTAAATATATTTAGGAAGATTGTGGATTTGGTGGATGATTCTCATTCTCAGGGGGTTGCACTGCATAACCTTTGTCCATCTTATATCAAATTGTTACCATCAAATCAGGTCGTGTACCTTGGGTTACCTACTCAAAAACAGATGGTAGACAGTGTTGTAAATTCTGAAGTTCTTCACTTAGATAATTCTTTTATTAGAAAAAGGATGTCTGAGCAAGTACTTCCCTCTCCTGATATGGGGTCAAAGAAGCACAAATTCAACGATAACGTGATAGTTACAGGGAGTGACTTGTGTCTTGAAACTGCCAGTGATCATAAAGTTCATATTCCTAGAATTGGATCTCAAGATTATCGAAATGAATACGAGGAAGATATCCAATTTTCCAAATATAATATTGGGAGAATGTCTAGCATTCCTCATGTATCTAATGCAGGTCAATTGTCATCAACTTTTTTAAGTGAAGGATTGGAAAATAAGTNGTATGCAAGTCCTGAGGGAGGTTGCACAACATCATCAAATATCTACTGCCTTGGTGTCCTCCTTTTTGAGTTACTAGGCCATTTTGACTCTGAAAGAGCACATGTTGCAGCAATGTCTGATCTTCGTCATAGGATTCTTCCTCCTGTTTTCCTATCAGAAAATCCCAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCTGAACCATCATTACGCTGGATGTGGTGGTGGTGCACCTGGACAGCTGGCGAAGATGACGACGAACCTGACTTGTATACTATTGATATACAACTCCTACAATCTGAAGTGATTAATGGATTGCAGGAGTTGTATAGTGAGAAATTGTCATCAAGTATAGACCAAGAAGATGAAGAATCAGAATTGTTATTGCATTTCCTCATCTCATTACAAGAGCAGAAGCAGAACGATGCCTCCAAATTGGTTGAAGAAATCAAGTGCTTGGAATCAGACATAGAAGAGGTGGAGAGGAGGCACGGCTTACGAAAACCCTTGGTTTCCCCTGGCTTGCAGAATGATTACTCTTGTCGGAAAGAGATCACCCCTTTTAAAAAGGAACCTTNGAGTGTAGAAATGCTGCCCTCCGTATCCCCAAACTCTAATACAAATGAACTGAGATTGATGAGAAATGTATGTCATCTTGAAAGCGCTTACTTTTCCATGAGATCCAAAGTTCAGCTTTCTGAAACAGATGCTGCAACTCACCCAGATAAAGATATACTAAGAACTCGCGAGAACTGGTATCTGACCCAAAAAGGCGAGGAACAACCTAAAAGTAAAGATGCTCTAGGAACCTTCTTTGATGGTTTGTGCAAGTATGCATGTTATAGCAGGCTTGAAGTGCGGGGTATACTAAGAAATGCAGACTTTAACAATCCTGCAAATGTAATTTGCTCTCTGAGCTTTGATCGGGATGAAGAGTACTTTGCTTCTGCTGGGATATCTAAGAAAATAAAAGTTTTTGAATTTAGTTCACTTTGCAATGACTCTGTTGATATCCATTATCCTGCAGTTGAGATGTCAAACAGATCAAGGCTCAGCTGTGTTAGCTGGAATAACTATATTAAGAACTATCTTTCCTCTACAGACTATGATGGGGTAGTCAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAGTACACTGAACATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTCCGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAATACACTGAACATGAAAAGAGGGCTCGGTCTGTTGATTTCTCTCNGGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAACTGTGGAGCATCAGTGAGAGAAACTGTTTAGGCACGATCAGGAATGTTGCTAATGTCTGCTGTGTTCAATTCTCTGCTCATTCCTCTCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACTTATTGTTATGATCTTCGTAATCTTAGAAGTCCTTGGTGTGTATTGGTTGGCCATCGTAAAGCTGTAAGCTATGTCAAATTCTTAGACTCTGAAACACTTGTTTCTGCTTCTACCGATAGTACATTAAAGATCTGGGATCTCAATAAAACCTCTCCGGTGGGTGCATCGACTAATGCTTGCAGCCTTACCCTGTCAGGACATACTAACGAAAAGAATTTTGTAGGTTTGTCCGTTGCTGATGGATATATTGCATGTGGTTCGGAAACAAATGAGGTTTACACCTATTATCGATCGCTTCCCATGCCAGTCACTTCACACAANTTTGGGTCCATTGATCCCATCTCTGGTAAAGAGATTGATGATGACCGTGGACAGTTTGTTTCAAGTGTGTGTTGGAGAGGGAAATCCGACATGCTTATTGCGGCNAATTCAAGTGGATGTATCAAAGTGTTACAGATGGTTTAAAGGAAAGTTTGCCCTTGATGATGACTCTCTTACAGTTTCGTGCATTCCTACAGTTTTGCCTTTGCCACTCAGGCCAATACCATCAACTTGTTGGAAGAGTATAAAAAATTCTTTTGACATCTTGAGTTCATGTTTATATTTGTAATTTGATGAGAAATAGAAGTGCAATCTAAATCCAGATCTTTTGAAGGTTGGAGTCGTCATATTGATGAGCAAGCTTGGACTTTAGACCAGAATTTCACANTGTCATGTTTAGAAAAGGCTTNCTACACTTAATTTTTCCTGGGATCAATCTGAGAAGCAGTTTGAATATGAGAAGATTGAGACTTCGGAATTAGAATGGCAGGTGCTAAGTTGCTTCTAAGCTCAAGAATCTATCCTGTGTATGAGCCTATGTAAATTGCATTGCAGTCCTTTTCGGGTTTTTGTATTCACAAAGGACTAGCAATTGTAGGTTTGTAGGAAGAAATGATTGTTTATCTAAAGATAAAACAGCTTCCCCACCATAAAGGAAAGCATATAGGTTCAGTTGTAACACCTCCCATTTTTCTGTCTCACGGGGTGCACTCCGCTTCCAATGGTTGTATATATATA

Protein Sequence

>Glyur000577s00027236.1
MDGELVDEATPLEVAEDSQRQRKEDDEYSPNRESRRFSQEVFIPVKQGQDYSQISPRAYEDILHGKNVVKAISDAATSQHPRRSLFMDDAGVTVEELTVKSYNGSSLDIGTSSNRVHLYNQQKHWQNLYQLANNSGIGNSLSDIGQRNSGQAASSAWQDIGSTSFPELLARKSLSDGQSNVVEHLVDAESKEGEGDVHGGIRTKIISKSGFAEYFIKNTLKGKGTVCRGPSSDGFFVQPREQNQTKAGSDADQNQMKTGIGTEQNLMKTGIGKNKNKMKTGIVTGQKQMKTGFGTQSNSNLSGNYSSKTAKFPSYSDAMPRSGRSERDGVTLREWLKSGHHKASKVESLNIFRKIVDLVDDSHSQGVALHNLCPSYIKLLPSNQVVYLGLPTQKQMVDSVVNSEVLHLDNSFIRKRMSEQVLPSPDMGSKKHKFNDNVIVTGSDLCLETASDHKVHIPRIGSQDYRNEYEEDIQFSKYNIGRMSSIPHVSNAGQLSSTFLSEGLENKXYASPEGGCTTSSNIYCLGVLLFELLGHFDSERAHVAAMSDLRHRILPPVFLSENPKEAGFCLWLLHPEPSLRWMWWWCTWTAGEDDDEPDLYTIDIQLLQSEVINGLQELYSEKLSSSIDQEDEESELLLHFLISLQEQKQNDASKLVEEIKCLESDIEEVERRHGLRKPLVSPGLQNDYSCRKEITPFKKEPXSVEMLPSVSPNSNTNELRLMRNVCHLESAYFSMRSKVQLSETDAATHPDKDILRTRENWYLTQKGEEQPKSKDALGTFFDGLCKYACYSRLEVRGILRNADFNNPANVICSLSFDRDEEYFASAGISKKIKVFEFSSLCNDSVDIHYPAVEMSNRSRLSCVSWNNYIKNYLSSTDYDGVVKLWDASTGQEFSQYTEHEKRAWSVDFSPLWDASTGQEFSQYTEHEKRARSVDFSXVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLVGHRKAVSYVKFLDSETLVSASTDSTLKIWDLNKTSPVGASTNACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYTYYRSLPMPVTSHXFGSIDPISGKEIDDDRGQFVSSVCWRGKSDMLIAANSSGCIKVLQMV

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00577	111005	119868	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000577s00027236.1	PF00400.27	WD40	859	886	0.062
Glyur000577s00027236.1	PF00400.27	WD40	898	956	1.80E-06
Glyur000577s00027236.1	PF00400.27	WD40	1007	1040	7.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.007
SRR1783600	control	10.996
SRR1783602	moderate drought stress	11.955
SRR1811619	moderate drought stress	11.972

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.577
DRR006520	Root Summer glycyrrhizin high producing strain	13.524
DRR006521	Root Winter glycyrrhizin high producing strain	11.280
DRR006522	Root Winter glycyrrhizin high producing strain	10.845
DRR006523	Root Summer glycyrrhizin low producing strain	11.693
DRR006524	Root Summer glycyrrhizin low producing strain	11.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.970
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.925

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	16.465
SRR2868004	Drought Stress(Tissue:root)	17.845
SRR2967015	Control (Tissue:root)	19.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	10.461
SRR9715740	Leave	12.724
SRR9715741	Leave	11.397
SRR9715739	Root	2.115
SRR9715742	Root	12.694
SRR9715743	Root	11.559

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.966
SRR8749028	MeJA induced 9h	9.424
SRR8749029	MeJA induced 9h	2.605
SRR8749030	Uninduced	4.257
SRR8749031	Uninduced	2.857
SRR8749032	Uninduced	1.777

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	19.883
SRR8400027	Control-Root	19.047