Gene detail

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Gene detail information of Glyur000577s00027237.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64300.2	0	Protein kinase family protein
NR	XP_003611022.1	0	Integrin-linked protein kinase [Medicago truncatula]
COG	YP_004904659.1	2.00E-16	putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprot	tr\|P25848\|PHY1_CERPU	7.00E-34	Protein kinase
trEMBL	tr\|G7KAN4\|G7KAN4_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES93980.1}

Sequence

Transcript Sequence

>Glyur000577s00027237.1
ATGGAACAACTCCGGCATATTGGTGAGGTTCTCGGAAGCCTAAAAGCTTTGATGGTTCTACGCGATGAAATTCAAATAAACCAACGCCAATGCTGTTTGATCCTCGACATATTNAGCTTGGCATTCGAAACAATCGCAGACGAGATAAGACAGAGCCTGAAGCTAGAAGAGAGGAACACCAAATGGAAACCCCTCGAATCTCCTTTGAGGGAGCTATGCAGGGTTTTCAAAGAAGGAGAACTCTACATAAGGAATTGCCTCGATTCCAAGGATTGGTGGGGAAAAGCAATGACTTTTTCTCAGAACAGAGAGTGTGTTGAGTTTCANATCCACAACTTGCTCTGTTATTTCCCTGCGGTTATCGAAGCAATCGAGAATGCAGGGGAAATGTCGGGGCTCGACCAGGACGAGAAGGNTAAGAAGAAGGTTATGTTGGCTAGGAAGTATGACGTGGAATGGAACGACCCGAAGCTGTTCCAGTGGAGGTTCGGGAAGCAGTATTTGGTCCCTCGTGAGATTTGCAAGCAGATGGAGAATGCATGGAGGGAAGATAGGTGGAGGCTCATTGAAGCACTCAAGGAGAAGATGGTTTCTTCTTCTTCTTCTTATTCTCTTTCTTCCAATTCTAGAGTGATGGCGTTTACGAGGAACGAGCAACAACTTGCGAAGATGCTGCTGAAGAAGCTTCTGAATGGGTCAGAGAAAACGAATAAGGAACTGTGGCCAATTTCGGTGCTTTTAGGAGCCAAGGATTACCAAGTGAGGAGAAGATTGGGGAGGGGAAGAGAGTTTAAGGAAATCCAATGGCTGGGACAGAGTTTTGCGTTGAGGCATTTTCATGGGGAGAGAGAGTCTCATGAGTCTGAGATTTCAACTCTTTTGTCGCTTTCTCACCCAAACATATTGCAGTATCTGTGTGGGTTTTATGATGAGGAGAAGAAGGAGTTTTCTCTTGTGATGGAGTTGATGAACAAGGACCTTTGGACCTACATGAAGGAGAATTGTGGGCCCAGGAGACAGATTCTGTTCTCTATCCCTGTTGTGGTGGATCTCATGCTTCAGATGGCAAGGGGAATAGAATACCTCCACTCCCAAAAGATCTACCATGGTGACATTAATCCCTGTAACATCTTACTCAGAGCCAGGAACTCCCAAGAAGGTTTTTTTCAGAGTCCCATCGGTGATGACCTCAACCCTTCAATTTGGTATGCCCCTGAAGTTCTCACCGAGATGGAACAAACGGGAAACGCATCTACCTCTTCTTCGAAGTACACGGAGAAAGCTGATTCCTATAGCTTTGGGATGATATGCTTTGAGTTGCTGACTGGGAAAGTTCCCTTTGAGGATAACCACCTTCAAGGAGACAGAACAAGTCAAAAAATCAAAGCTGGGGAGAGACCTTTGTTCCCTTACCGTTCCCCAAAGTATCTTGTGAGCTTGATTAAAAAGTGCTGGCAAACTGACCCCGCTCAGCGTCCAGGTTTCTCATCTATCTGTAGGATCTTGCGCTACACAAAGAAGTTCCTTTCCGTGAACACTGAATACTATGTCATCAATCCTGAACTCAACCAGCTTGAGCTTATGTCCCCTCCTGTGGATTGTTGTGACATAGAAGCAATGTTCCTTAAGAGTTTTCCAATGGAGAGAGCGTGTAATCTCAATCTTTCCTCTGTGTCACAAATACCTTATGAAATGTTTGCTTATAAAGTTGCCGAGAAAGGGAAGCTCAATAGTAGCAATAATGCCAAAGATAAGTGCTGCGAGGCTGCAAAGGATGATCAACCCTTGGTGTGTGGCAACGAAAATGGTGATGACCAAAACACAGTTTGTGGAGATGATGTTAATGCATCCATCATGGAAGACCCAGTCCTCCCACTAGGAACCGATCCAAGATCAATTTGTGATGACACAATGTCTGTTTGTTCCGAAGCCCCGTCCAGGAAAAGTGTTACAATAAAGATTCCAACAGTACAAATTAAGCCCAAGAAAGACCAAGGAAAGTCGAAATTGCGAGCGACAAGATCATTACCACCATCTTTATCTGGTCGCATTTTAAGGCCAAATAAGGTGAACCAGGCGTCACTGGCGTCGAGTCCTATGAGCCCCGGTAGAAGAAGGCCTCCCAATGTTGTCTCTGAATTCGAGCGCAACTCCAATATCAACAAAGGGAGTGGTGGTCAATCACCACTAGTGTCTACTTTCAGCAGAAGAAAAAGACTTGATGGCAATGTCTCCGATTCTAAGCCCAGTTTAAAGCTGAAAACAAGGGATCATTCACGATTAACCAGAAATGGCCGTGTCACGGATACTAATAACGTTACTTTAAGGATGAAGAAGTCACAAATGACATCGAACCCTTCTTCGAGCCCGAGCCCGGCAAGACTGAGACGTGTCAACACTGACACCAATTTGAGGATGCAAAAGGGGTTCATGTCATCAACATCCCCTGCGTTGAGCACTTCGAGAACATCGTGCACGAGCGGAAGAAAATGTTGTCATGTCTCAGATTCGGACAGTGGTTTGAGGATAAGAGATAGACTGTCACCGTTGGCATTGAGTCCCTTGAGTCCATATGTGAGAAGAAGAACAACAACATGCGGCCATGTCTCTGATTCAGAGAGCAATTCTATGATGAATAGAGGGAGCCTGTCACCGTTAGCATTGAGCCCTTTGAGCCCGTATGTAAGAACAACATGTGGTCATGTCTCTGATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00577	120650	124257	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000577s00027237.1	PF06760.6	DUF1221	21	251	8.20E-93
Glyur000577s00027237.1	PF00069.20	Pkinase	268	499	2.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.159
SRR1783600	control	0.166
SRR1783602	moderate drought stress	0.304
SRR1811619	moderate drought stress	0.274

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.613
DRR006520	Root Summer glycyrrhizin high producing strain	0.511
DRR006521	Root Winter glycyrrhizin high producing strain	0.041
DRR006522	Root Winter glycyrrhizin high producing strain	0.039
DRR006523	Root Summer glycyrrhizin low producing strain	0.816
DRR006524	Root Summer glycyrrhizin low producing strain	0.850
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.580
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.288
SRR2868004	Drought Stress(Tissue:root)	0.234
SRR2967015	Control (Tissue:root)	0.186

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.399
SRR9715740	Leave	0.567
SRR9715741	Leave	0.288
SRR9715739	Root	0.110
SRR9715742	Root	0.105
SRR9715743	Root	0.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.161
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.100
SRR8749030	Uninduced	0.023
SRR8749031	Uninduced	0.028
SRR8749032	Uninduced	0.021

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.093
SRR8400027	Control-Root	0.186