Gene detail

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Gene detail information of Glyur000577s00027239.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11140.1	1.00E-27	cytokinin response factor 1
NR	XP_007158558.1	3.48E-116	hypothetical protein PHAVU_002G162500g [Phaseolus vulgaris]
Swissprot	tr\|O82503\|CRF1_ARATH	7.00E-49	Ethylene-responsive transcription factor CRF1
trEMBL	tr\|V7CK28\|V7CK28_PHAVU	1.00E-116	Uncharacterized protein {ECO:0000313\|EMBL:ESW30552.1}

Sequence

Transcript Sequence

>Glyur000577s00027239.1
ATGACCGAGCCACCGACGAAGAAGTACACTCACCACCTCAACCACCACACCAAACTCCTCCTCACAGAGGAAGACCCTCTTCCGAAGCACCCATGTCCGAGAGTGGTGAGGATAACTGTCACGGATACTGATGCTACCGACAACTCCAGCGACGAAGACGAAGCCTACGCGTCTTCCTCCACGCGCCACCGTAGTCACAGAAAGTTCGTCAACGAGATTATCATTGAGCCGCCGCCGTCGTCGTCAACGAGCGAGAATTACGGCGGCGTCGTTTCTAGGAAGAGGAGCAGGACCACCAAGGCCGGAGGCGGCAAAGTCAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCATCGAGACGCGTACGGTTGTGGCTTGGTACCTTTGATACCGCCGAGGAAGCTGCCATGGTGTACGACAACGCCGCCATTAAGCTTCGTGGACCCGACGCGCTCACGAATTTCGTAACCCCACCGCCCGCCACGTGGCAGTGCTTGCCGGAGAACGAAACGCCGCCTCAGCCGGCGAACTGCGGTTACAATTCCGGGGAAGAGTTGCAGAGCCAGAGCAAGAGCTTGTTTTCTCCAACTTCCGTGTTTCATTGTTGTTCTTCATCCGAGGAAGTGGAATCTGTAACGGGAAAAGACGACGAGTATCACTCGTGCGTGTCGGAGAATAAAGTTAAGGTTGAATCCGAGTCGTCACTGTTTTCAATTCCAAGTGATATACTATTTGACTTCCAAGGTTCTTCTTCGCCAGCAAGGGACGTGTTTGGCAACTTCGATAACACACCGGAGAGCGTCTTCTTTGGGGATATTAGTTTTCCCGGTGGTGCCTTTCTCACTTCTTCTGATGAGGATTTCGATTTCGGTCTCAAAACTTGGCATACGCAAAGAGATTGTGACTTTTTCCAAGACATTGACGACTTGTTTGTTTCGGATCCTCTTCTTGCTCTTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00577	140858	141877	-

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000577s00027239.1	PF00847.15	AP2	107	157	1.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.234
SRR1783600	control	0.190
SRR1783602	moderate drought stress	0.302
SRR1811619	moderate drought stress	0.228

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.223
DRR006524	Root Summer glycyrrhizin low producing strain	0.223
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.754
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.587

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.148
SRR2868004	Drought Stress(Tissue:root)	2.295
SRR2967015	Control (Tissue:root)	2.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.624
SRR9715740	Leave	0.381
SRR9715741	Leave	0.372
SRR9715739	Root	3.990
SRR9715742	Root	1.496
SRR9715743	Root	2.517

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.471
SRR8749028	MeJA induced 9h	0.160
SRR8749029	MeJA induced 9h	0.278
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.116
SRR8400027	Control-Root	2.471