Gene detail information of Glyur000578s00020997.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08600.40P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_004495589.10PREDICTED: transcriptional regulator ATRX-like [Cicer arietinum]
COGYP_001254100.11.00E-43Snf2 family helicase [Clostridium botulinum A str. ATCC 3502]
Swissprottr|F4HW51|CHR20_ARATH0Protein CHROMATIN REMODELING 20 {ECO:0000303|PubMed:16547115}
trEMBLtr|K7LJT7|K7LJT7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G30746.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005781249839147+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000578s00020997.1PF00176.18SNF2_N80311191.10E-55
Glyur000578s00020997.1PF00271.26Helicase_C125113256.30E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.167
SRR1783600control11.371
SRR1783602moderate drought stress14.835
SRR1811619moderate drought stress14.690

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.722
DRR006520Root Summer glycyrrhizin high producing strain13.506
DRR006521Root Winter glycyrrhizin high producing strain31.872
DRR006522Root Winter glycyrrhizin high producing strain31.164
DRR006523Root Summer glycyrrhizin low producing strain14.404
DRR006524Root Summer glycyrrhizin low producing strain14.166
DRR006525Leaf Summer glycyrrhizin high producing strain8.704
DRR006526Leaf Summer glycyrrhizin high producing strain8.772

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.588
SRR2868004Drought Stress(Tissue:root)32.818
SRR2967015Control (Tissue:root)32.640

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.890
SRR9715740Leave17.914
SRR9715741Leave20.062
SRR9715739Root1.382
SRR9715742Root14.387
SRR9715743Root11.911

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.250
SRR8749028MeJA induced 9h32.863
SRR8749029MeJA induced 9h34.969
SRR8749030Uninduced37.786
SRR8749031Uninduced55.155
SRR8749032Uninduced53.509

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.825
SRR8400027Control-Root25.458

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved