Gene detail information of Glyur000578s00021003.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04380.1 | 7.00E-133 | SET-domain containing protein lysine methyltransferase family protein |
| NR | XP_004495583.1 | 0 | PREDICTED: histone-lysine N-methyltransferase SUVR1-like isoform X1 [Cicer arietinum] |
| COG | YP_001561914.1 | 2.00E-11 | nuclear protein SET [Delftia acidovorans SPH-1] |
| Swissprot | tr|Q8W595|SUVR4_ARATH | 7.00E-171 | Histone-lysine N-methyltransferase SUVR4 |
| trEMBL | tr|K7N541|K7N541_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G37135.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00578 | 61461 | 67078 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000578s00021003.1 | PF10440.4 | WIYLD | 2 | 61 | 9.60E-21 |
| Glyur000578s00021003.1 | PF05033.11 | Pre-SET | 368 | 516 | 2.20E-17 |
| Glyur000578s00021003.1 | PF00856.23 | SET | 536 | 657 | 2.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.000 |
| SRR1783600 | control | 2.076 |
| SRR1783602 | moderate drought stress | 3.663 |
| SRR1811619 | moderate drought stress | 3.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.136 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.268 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.706 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.336 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.314 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.409 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.550 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.636 |
| SRR2967015 | Control (Tissue:root) | 3.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.077 |
| SRR9715740 | Leave | 5.594 |
| SRR9715741 | Leave | 5.012 |
| SRR9715739 | Root | 0.303 |
| SRR9715742 | Root | 1.919 |
| SRR9715743 | Root | 1.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.441 |
| SRR8749028 | MeJA induced 9h | 13.195 |
| SRR8749029 | MeJA induced 9h | 10.718 |
| SRR8749030 | Uninduced | 14.145 |
| SRR8749031 | Uninduced | 24.677 |
| SRR8749032 | Uninduced | 11.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.803 |
| SRR8400027 | Control-Root | 4.712 |