Gene detail information of Glyur000578s00021007.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23250.1 | 4.00E-57 | myb domain protein 15 |
| NR | XP_003521771.1 | 9.36E-90 | PREDICTED: myb-related protein Myb4 [Glycine max] |
| Swissprot | tr|Q7XBH4|MYB4_ORYSJ | 2.00E-73 | Myb-related protein Myb4 |
| trEMBL | tr|I1JRS3|I1JRS3_SOYBN | 3.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G41100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00578 | 83512 | 84836 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000578s00021007.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 4.70E-15 |
| Glyur000578s00021007.1 | PF00249.26 | Myb_DNA-binding | 67 | 112 | 1.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.619 |
| SRR1783600 | control | 1.543 |
| SRR1783602 | moderate drought stress | 1.040 |
| SRR1811619 | moderate drought stress | 0.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.466 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.555 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.433 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.313 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.395 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.148 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.569 |
| SRR2967015 | Control (Tissue:root) | 1.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.637 |
| SRR9715740 | Leave | 0.449 |
| SRR9715741 | Leave | 4.224 |
| SRR9715739 | Root | 2.814 |
| SRR9715742 | Root | 3.244 |
| SRR9715743 | Root | 3.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.768 |
| SRR8749028 | MeJA induced 9h | 1.625 |
| SRR8749029 | MeJA induced 9h | 4.567 |
| SRR8749030 | Uninduced | 30.173 |
| SRR8749031 | Uninduced | 88.059 |
| SRR8749032 | Uninduced | 30.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.265 |
| SRR8400027 | Control-Root | 4.369 |