Gene detail information of Glyur000578s00021010.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34530.1 | 2.00E-51 | cryptochrome-interacting basic-helix-loop-helix 1 |
| NR | XP_003537877.1 | 0 | PREDICTED: transcription factor bHLH49-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8GY61|BH063_ARATH | 6.00E-60 | Transcription factor bHLH63 |
| trEMBL | tr|I1LJC6|I1LJC6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G12450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00578 | 96899 | 99478 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000578s00021010.1 | PF00010.21 | HLH | 221 | 268 | 2.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.341 |
| SRR1783600 | control | 7.509 |
| SRR1783602 | moderate drought stress | 8.398 |
| SRR1811619 | moderate drought stress | 8.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.440 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.012 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.885 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.459 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.139 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.806 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 61.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.596 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.431 |
| SRR2967015 | Control (Tissue:root) | 4.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 37.733 |
| SRR9715740 | Leave | 20.444 |
| SRR9715741 | Leave | 21.435 |
| SRR9715739 | Root | 1.617 |
| SRR9715742 | Root | 7.272 |
| SRR9715743 | Root | 4.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.272 |
| SRR8749028 | MeJA induced 9h | 5.709 |
| SRR8749029 | MeJA induced 9h | 8.256 |
| SRR8749030 | Uninduced | 2.247 |
| SRR8749031 | Uninduced | 6.382 |
| SRR8749032 | Uninduced | 26.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.508 |
| SRR8400027 | Control-Root | 11.224 |