Gene detail

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Gene detail information of Glyur000579s00034293.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27300.1	5.00E-65	S-locus lectin protein kinase family protein
NR	XP_004509984.1	3.46E-111	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Cicer arietinum]
COG	YP_004981777.1	6.00E-09	Serine/threonine protein kinase with PASTA sensors [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprot	tr\|O81833\|SD11_ARATH	5.00E-69	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 (Precursor)
trEMBL	tr\|I1LSX9\|I1LSX9_SOYBN	1.00E-109	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G21040.1}

Sequence

Transcript Sequence

>Glyur000579s00034293.1
ATGCCACCAAAGAAGATGGAGGCAAAGGTGTTGGCCCTAGAAAACAGAATGGACAAGTTCGAAGCCACCTTGGTGGAGATGCGCGCCCAAGCAGCTGCTGATCAAGAAATGCTAGTGTCGTTATTGACCCAGAACAAGAGTACTGAGGGTCCAGAAAAAACCATAGGGAACCTCAACGATGAAGACGGTGCTAGTACTCTTGACTCACCGGAGATGAAGAAGTTATTGCAGAAATTACAGAGAGCTGACCTTGATGAGTTTAAGCAATCAGTGAAGAAGGTAGAACTCCCCATGTTTGATGGTGAGGATCCAGCAGGATGGATTGTCCGGGCGGAGATTTACTTCAAGACTTTTGAGAAATTGGTAGCGCAGGATGATGAACTTAGCTCGAGCAGGGGTGGCTCCTCTAACTTTCGTTTTCAGGGTGCCCAAAACAGCGATTGGGTCTATGTGAAAGGAGCTAAAGAGAGCCCAGATAAGGGGGGACTAATTCAGGCCCAAAAACAGAGTTCAGAAATGAGAGAAAGCAATTTGGACCCAGGGACAAAGGGATACGTCATCTATCTTACCAGCAATTCGCACCAACGTCCAGACCGCCAGCTTCGTATAATGATGACGGAGGATGACGACTTTGATGAAGGAGAGGTGCAAGTCATGGAGGGCGGAGAAGATGAGGGCGATGAGGAGGGGGAGCTGAGTGTCATGAGTCTAATGGGGTTGTCTGTTATGAGATCCAGAGAAGTGAGAACCATGAAGTTGAGGGGGAAAGTGGAGGTGACCACTCCTTTGTACATCAAATTGGGGGATGGTTTTATGGCCAAAACCCAAGGAGAGTGTAAGGGGGTAATGCTAGAAATCGCTGATTTGAAGGTGAAGATTGATGCCCAGGCTTCCTTTCTCTGCGTTCTAAAGTTTGCTGGTAGACCGCGACATGTTGTTGAGGGGCTCTTCATGACATTGGAAGGGCAGCTGGAGCCTAAGGGCTTACCTCCCAAGCGAATGCATGAGCATGCCATCTACCTGATCAAAGGACAAGGGCCCGTTAATGTTAGACCCTATAGATACTCCCATCATCACAAGATCGAGATAGAGAAACAAGTACAGGAAATGCTGCAGATGGGCATAATTCGTCCCAGTCAAAGCGTTTTTTCTAGTCCGGTTATTTTGGTGAAGAAAAAGGACGGGACATGGCGTATGTGCGTGGATTATAGAGCACTCAACAAGGTAACTGTACCCGATAAATTTCCTATTCCGATTATTGATGAATTGTTGGATGAGTTGTATGGTGCCCACTATTTTTCTAATATTGATCTGAAATCGGGTTACCACCAAGTACGGATGAGAACGGAAGATATACACAAAACTGCGTTTCGCACGCACGAGGGGCATTATGAATATTTAGTTAATGCCTTTTGGGATGATGAACGCCCCGTCTACATTCCAAGCTTTGATGAATGCAGTTTTAAAACCTATGTTGAGGAAGATTTGTGTTTTATTGCTGATCAGCCTAGAACATGGGTGGTATGGATGCCATGGGCTGAATTGTGGTATAATACTACTTTCCATGTTTCTATGGTGAAGGTTGAGGTTGTTCAAAGGGAGTTGGCTGAGAGGGATGAATGTTTGCGACAGTTAAAGCATCATTTACTGCTCGATTCTGGATGGGTGCCTATGTCTGTTTTGGCGACCCGAACTATCACCAGAGACAATGAGGCTCATCAATTTCCTGATCTCAGACTTGAGGACAAGTCTGATTCTCAAGGAGAGGATATTGATAGGCCCAGGGAGAATGTTTCGGGCTTAGGGGAGCAAAGGGTCTATGTGAGGAGAAATAGGAAGAAAGGAGAGAATGATTACGTGGCAGAGAGAGAGGGGGAAATAAGTAAGCTCTTACCCTGGCCTCAACGTTTCCACATTATTGGCGGCATTGCTCGGGGGCTTCTCTATCTTCACCAAGACTCTACACTCAGAGTTATTCACAGAGATTTGAAAACCAGCAACATCCTACTAGATGCCCACATGAATCCAAAAATCTCAGACTTCGGCCTTGCTCGAACTTTTGGGGGTGATCAAGTTGAAGCCAAAACAAGAAGAATGTATGCTGTGCATGGACGATACTCGGTGAAATCAGATGTCTTTAGTTTTGGTGTAATAGTACTAGAGATAGTCAGCGGGAATAAGAATAAGGGATTTTCTGACCCAGAACAGTCTCTTAATCTTCTTGGACATGCATGGAGACTCTGGACTGAAGAGAGGCCACTGGAACTGCTAGATGAACACTTACTTGAAACATGCATTTCTTATGAAGTCTTAAGATGCATACATGTGGGTTTGTTGTGTGTACAACAAAAACCAGGAGACAGGCCAGACATGTCCTCTGTCATTCTTATGCTAAATGGTGAGAAATTATTGCCTCAGCCCAAGACTCCTGGATTTTATACTGGAAAGGGTTTACCTGAAACAGCATCCCCATCCTCAAATCAGATGTCACTTACATTTTTTGAGGCAAGATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00579	71221	77294	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000579s00034293.1	PF00078.22	RVT_1	390	480	3.60E-06
Glyur000579s00034293.1	PF00069.20	Pkinase	629	726	5.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.539
SRR1783600	control	0.355
SRR1783602	moderate drought stress	0.546
SRR1811619	moderate drought stress	0.711

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.560
DRR006520	Root Summer glycyrrhizin high producing strain	0.503
DRR006521	Root Winter glycyrrhizin high producing strain	1.022
DRR006522	Root Winter glycyrrhizin high producing strain	0.972
DRR006523	Root Summer glycyrrhizin low producing strain	0.820
DRR006524	Root Summer glycyrrhizin low producing strain	0.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.669
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.809
SRR2868004	Drought Stress(Tissue:root)	3.320
SRR2967015	Control (Tissue:root)	1.886

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.929
SRR9715740	Leave	1.151
SRR9715741	Leave	3.745
SRR9715739	Root	0.039
SRR9715742	Root	0.269
SRR9715743	Root	0.458

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.232
SRR8749029	MeJA induced 9h	0.059
SRR8749030	Uninduced	1.765
SRR8749031	Uninduced	1.023
SRR8749032	Uninduced	0.801

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.287
SRR8400027	Control-Root	1.233