Gene detail information of Glyur000580s00024196.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36800.2 | 2.00E-66 | RUB1 conjugating enzyme 1 |
| NR | NP_001242389.1 | 3.57E-90 | uncharacterized protein LOC100813186 [Glycine max] |
| Swissprot | tr|Q9SDY5|RCE1_ARATH | 1.00E-83 | NEDD8-conjugating enzyme Ubc12 |
| trEMBL | tr|I1J8Y8|I1J8Y8_SOYBN | 2.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38470.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00580 | 3403 | 7598 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000580s00024196.2 | PF00179.21 | UQ_con | 48 | 141 | 1.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 93.089 |
| SRR1783600 | control | 90.601 |
| SRR1783602 | moderate drought stress | 65.438 |
| SRR1811619 | moderate drought stress | 63.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 82.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 81.967 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 78.931 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 81.742 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 80.213 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 79.728 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.296 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 132.403 |
| SRR2868004 | Drought Stress(Tissue:root) | 122.530 |
| SRR2967015 | Control (Tissue:root) | 113.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 52.325 |
| SRR9715740 | Leave | 53.760 |
| SRR9715741 | Leave | 68.236 |
| SRR9715739 | Root | 22.761 |
| SRR9715742 | Root | 34.631 |
| SRR9715743 | Root | 36.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 139.547 |
| SRR8749028 | MeJA induced 9h | 160.735 |
| SRR8749029 | MeJA induced 9h | 127.526 |
| SRR8749030 | Uninduced | 162.585 |
| SRR8749031 | Uninduced | 171.669 |
| SRR8749032 | Uninduced | 100.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 112.721 |
| SRR8400027 | Control-Root | 111.511 |