Gene detail information of Glyur000580s00024197.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36810.1 | 3.00E-119 | geranylgeranyl pyrophosphate synthase 1 |
| NR | XP_003537515.2 | 0 | PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] |
| COG | YP_007133900.1 | 2.00E-124 | Farnesyltranstransferase [Stanieria cyanosphaera PCC 7437] |
| Swissprot | tr|Q94ID7|GGPPS_HEVBR | 2.00E-180 | Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor) |
| trEMBL | tr|I1LHM6|I1LHM6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G06820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00580 | 13948 | 15066 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13789 | GGPS | EC:2.5.1.1 2.5.1.10 2.5.1.29 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000580s00024197.1 | PF00348.12 | polyprenyl_synt | 109 | 358 | 4.80E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.505 |
| SRR1783600 | control | 0.538 |
| SRR1783602 | moderate drought stress | 0.686 |
| SRR1811619 | moderate drought stress | 0.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.194 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.192 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.762 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.485 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.099 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.703 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.783 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.169 |
| SRR2967015 | Control (Tissue:root) | 15.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 33.740 |
| SRR9715740 | Leave | 18.942 |
| SRR9715741 | Leave | 28.763 |
| SRR9715739 | Root | 1.776 |
| SRR9715742 | Root | 1.248 |
| SRR9715743 | Root | 1.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.063 |
| SRR8749028 | MeJA induced 9h | 0.060 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.317 |
| SRR8400027 | Control-Root | 3.450 |