Gene detail information of Glyur000580s00024201.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G23780.13.00E-60RING/U-box superfamily protein
NRXP_006573604.14.25E-149PREDICTED: RING finger protein 5-like [Glycine max]
Swissprottr|Q6R567|RMA1_CAPAN3.00E-27E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|I1J8Z2|I1J8Z2_SOYBN2.00E-149Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38510.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005803448535180+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000580s00024201.1PF13923.1zf-C3HC4_232726.20E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.898
SRR1783600control40.219
SRR1783602moderate drought stress40.782
SRR1811619moderate drought stress39.084

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain80.619
DRR006520Root Summer glycyrrhizin high producing strain79.299
DRR006521Root Winter glycyrrhizin high producing strain49.541
DRR006522Root Winter glycyrrhizin high producing strain48.308
DRR006523Root Summer glycyrrhizin low producing strain95.369
DRR006524Root Summer glycyrrhizin low producing strain94.694
DRR006525Leaf Summer glycyrrhizin high producing strain30.653
DRR006526Leaf Summer glycyrrhizin high producing strain30.023

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.498
SRR2868004Drought Stress(Tissue:root)57.224
SRR2967015Control (Tissue:root)54.608

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave93.175
SRR9715740Leave101.665
SRR9715741Leave96.647
SRR9715739Root200.064
SRR9715742Root124.500
SRR9715743Root137.055

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h48.920
SRR8749028MeJA induced 9h43.338
SRR8749029MeJA induced 9h65.997
SRR8749030Uninduced20.985
SRR8749031Uninduced15.447
SRR8749032Uninduced67.348

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.048
SRR8400027Control-Root76.041

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved