Gene detail information of Glyur000580s00024203.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50760.1 | 3.00E-128 | galacturonosyltransferase-like 2 |
| NR | XP_003516580.1 | 0 | PREDICTED: probable galacturonosyltransferase-like 1-like isoform X1 [Glycine max] |
| COG | YP_007062961.1 | 3.00E-21 | LPS:glycosyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|Q9S7G2|GATL2_ARATH | 1.00E-174 | Probable galacturonosyltransferase-like 2 |
| trEMBL | tr|I1J8Z3|I1J8Z3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00580 | 42880 | 43965 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000580s00024203.1 | PF01501.15 | Glyco_transf_8 | 73 | 335 | 2.80E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.075 |
| SRR1783600 | control | 3.126 |
| SRR1783602 | moderate drought stress | 3.095 |
| SRR1811619 | moderate drought stress | 3.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.828 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.211 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.830 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.832 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.615 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.753 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.804 |
| SRR2967015 | Control (Tissue:root) | 7.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.477 |
| SRR9715740 | Leave | 8.199 |
| SRR9715741 | Leave | 3.833 |
| SRR9715739 | Root | 8.754 |
| SRR9715742 | Root | 11.253 |
| SRR9715743 | Root | 12.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.813 |
| SRR8749028 | MeJA induced 9h | 14.217 |
| SRR8749029 | MeJA induced 9h | 20.410 |
| SRR8749030 | Uninduced | 0.997 |
| SRR8749031 | Uninduced | 0.938 |
| SRR8749032 | Uninduced | 6.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.555 |
| SRR8400027 | Control-Root | 3.924 |