Gene detail

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Gene detail information of Glyur000580s00024206.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23770.1	3.00E-122	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NR	ABN50364.2	0	LysM-domain containing receptor-like kinase [Sesbania rostrata]
COG	YP_003266417.1	9.00E-18	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|O64825\|LYK4_ARATH	4.00E-167	LysM domain receptor-like kinase 4 (Precursor)
trEMBL	tr\|A3FMG8\|A3FMG8_SESRO	0	LysM-domain containing receptor-like kinase {ECO:0000313\|EMBL:ABN50364.2}

Sequence

Transcript Sequence

>Glyur000580s00024206.1
ATGCATCTCTCTCCCTTCATCCCTGTCTTCATTTTCACCCTGTTGAACTTGATCAGCAGCATCTCTTTCATTCAGTGTCAGCAACCTTACATTGGTTTAGCCACAACAGCATGCCCTCGAAGGGGTAATTCAAAATCCATCCGTGGATACACTTGTAATGGAGCTAGTCACAGTTGCCAAGCTTACCTCACCTTCAGATCTCAACCCATCTACAGTTCAGTTTCCAAAATATCATCTTTGTTGGGTTCTGACCCATCCCAGTTTGCAGAACTAAACTCAGTTTCCCTCAACGACACCTTTGAACCAAACAAGTTAGTGATTGTTCCAGTNAGTTGCTCTTGCGCAAGTGAGTACTATCAGGCAAACACATCCTACGTGTTCCAGAACACAGACACTTACTTTTTGGTTGCTAATAACACCTTTGAGGGACTCACAACATGTCAAGCTTTGATGCATGAAAACCACAACCCTGGTGATATATACACTGGGAGGAAACTCTTGGTTCCTCTTAGATGTGCTTGTCCCACAAAGAACCAAACCGAGAAAGGCATAAAATACCTCTTGAGTTACCTTGTGAATTGGGGTGATTCTGTTTCACTCATTAGTGAGAGATTTGGTGTCAACTCTAATAACACTCTTGAAGCCAATAACCTTTCTTCGACAGCCACCATCTACCCTTTTACCACACTTCTAGTTCCCCTCCATGATAAGCCCTCAAGTCTTCAAACCGTTTTGCCAGCTCAACCACCTTCCCCTTCATCTTCCACAGATCATAAAAGTTCAAAGAAAACGTGGGTGTATGTAGTGGTTGGAGTACTTGGAGGAGTTGTTGCCTTAGTATCAGTTCTCTGTGTTGTCATTTTCTGCACACACTATGTTAAAAAGAAAGATGATGACAAGGTGATTGTGTCTGAGAGTTTTGATGCAATTGAGAAACCACAAGAGAAGGAAATTAACAAAGGAGATGAAAAATTGTCAGAGATCATATCTGGCNTAGCTCAATCGTTCAAAGTGTATAGTTTTGAGGAACTAGTGAGTGCAACAGATAATTTCAGTCCTAGTTGCTGGATTAAAGGGTGTGTTTATCACGGTGTTATCAAAGGAGATTTGGCNGCAATTAAAAAGACAGAAGGGGATGTGTCGAAGGAGATACAGATTCTGAACAAAGTCAACCATTCCAATGTGATACGCCTCTCTGGGGTTAGCTTCAACGAGGGTCAATGGTACCTTGTTTATGAGTATGCTGCTAATGGAGCATTGAGTGACTGGATCTACTTTAATAACGTGGATGGAAAGTTTCTGAGTTGGACAAAGAGAATACAAATTGCATTGGATGTGGCCGCTGGAGTTGACTATCTTCATAGCTTCACTTCTCCTCCACATATCCACAAGGATCTAAAGAGTAGTAACGTTCTTCTTGACAGTGACTTCAGGGCAAAAGTTGCAAACTTGGGACTTGCGAGGTGTGTGGAAGGAGTGGANGATGATGTTGATCAATTTCTTGCTACGAGGCATATTGTTGGAACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAACGGTNTTGTATCCACAAAGCTTGATGTGTATGCATTTGGGGTACTGTTGTTGGAAATCCTCACTGGAAAAGAGGTTGCTGCTATTTTAGCAGAAGATAAAGATATTAATATGAATTTGTCTGATGTTTTAAGTGCCATACTTGGTGGTAAAGAAAGTGGCCAAGAGAGGNTGAAGGAGTTCATGGATCCCTCTCTGCAAGAGAATTATCCATTAGAACTTGCCATGTTTGTGATTGAAGTGATCGATAATTGCATAAAGAAGGATCCAGCAAGTCGCCCTGCCATGAACGAGATTGTGCCTGCTCTTTCCAGAACACTGAACTCTTCATTGAGTTGGGAAATGTCAGTGAACGTCCCTGGGTACTTTAGCAAGATCTCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00580	69739	71679	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000580s00024206.1	PF01476.15	LysM	191	233	2.40E-05
Glyur000580s00024206.1	PF00069.20	Pkinase	379	619	2.80E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.698
SRR1783600	control	47.007
SRR1783602	moderate drought stress	21.037
SRR1811619	moderate drought stress	20.965

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.300
DRR006520	Root Summer glycyrrhizin high producing strain	47.857
DRR006521	Root Winter glycyrrhizin high producing strain	2.183
DRR006522	Root Winter glycyrrhizin high producing strain	2.094
DRR006523	Root Summer glycyrrhizin low producing strain	68.936
DRR006524	Root Summer glycyrrhizin low producing strain	67.980
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.376
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.340

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	42.446
SRR2868004	Drought Stress(Tissue:root)	38.016
SRR2967015	Control (Tissue:root)	38.838

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.336
SRR9715740	Leave	7.249
SRR9715741	Leave	5.699
SRR9715739	Root	16.184
SRR9715742	Root	82.929
SRR9715743	Root	73.419

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.229
SRR8749028	MeJA induced 9h	82.029
SRR8749029	MeJA induced 9h	66.985
SRR8749030	Uninduced	8.075
SRR8749031	Uninduced	4.131
SRR8749032	Uninduced	11.548

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.281
SRR8400027	Control-Root	27.703