Gene detail information of Glyur000580s00024210.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36860.10LIM domain-containing protein
NRXP_003517260.10PREDICTED: protein DA1-related 1-like isoformX1 [Glycine max]
COGYP_007039105.18.00E-08hypothetical protein BN6_49630 [Saccharothrix espanaensis DSM 44229]
Swissprottr|Q8W4F0|DAR1_ARATH0Protein DA1-related 1
trEMBLtr|I1J903|I1J903_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38640.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005808506390843-


Gene family

Gene familysubfamily
Transcription Factors FamilyLIM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000580s00024210.2PF00412.17LIM1702251.50E-09
Glyur000580s00024210.2PF12315.3DUF36333195347.50E-103


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.133
SRR1783600control18.261
SRR1783602moderate drought stress26.612
SRR1811619moderate drought stress26.425

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.105
DRR006520Root Summer glycyrrhizin high producing strain31.400
DRR006521Root Winter glycyrrhizin high producing strain19.083
DRR006522Root Winter glycyrrhizin high producing strain19.093
DRR006523Root Summer glycyrrhizin low producing strain31.618
DRR006524Root Summer glycyrrhizin low producing strain31.457
DRR006525Leaf Summer glycyrrhizin high producing strain21.996
DRR006526Leaf Summer glycyrrhizin high producing strain21.568

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.678
SRR2868004Drought Stress(Tissue:root)30.789
SRR2967015Control (Tissue:root)31.010

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.243
SRR9715740Leave25.624
SRR9715741Leave26.254
SRR9715739Root6.725
SRR9715742Root19.731
SRR9715743Root14.585

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.715
SRR8749028MeJA induced 9h21.605
SRR8749029MeJA induced 9h10.328
SRR8749030Uninduced17.504
SRR8749031Uninduced9.495
SRR8749032Uninduced11.851

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.165
SRR8400027Control-Root19.327

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved