Gene detail information of Glyur000580s00024213.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G23740.20nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding
NRXP_003538829.10PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max]
COGYP_003280830.12.00E-13nuclear protein SET [Comamonas testosteroni CNB-2]
Swissprottr|O64827|SUVR5_ARATH0Histone-lysine N-methyltransferase SUVR5
trEMBLtr|G7KAR8|G7KAR8_MEDTR0Histone-lysine N-methyltransferase SUVR5-like protein {ECO:0000313|EMBL:AES94831.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00580129054140212-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0034968  histone lysine methylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0018024  histone-lysine N-methyltransferase activity

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000580s00024213.1PF05033.11Pre-SET120913415.80E-16
Glyur000580s00024213.1PF00856.23SET136014815.60E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.733
SRR1783600control6.771
SRR1783602moderate drought stress8.582
SRR1811619moderate drought stress8.475

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.419
DRR006520Root Summer glycyrrhizin high producing strain5.320
DRR006521Root Winter glycyrrhizin high producing strain2.365
DRR006522Root Winter glycyrrhizin high producing strain2.331
DRR006523Root Summer glycyrrhizin low producing strain6.067
DRR006524Root Summer glycyrrhizin low producing strain6.189
DRR006525Leaf Summer glycyrrhizin high producing strain3.833
DRR006526Leaf Summer glycyrrhizin high producing strain3.821

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.483
SRR2868004Drought Stress(Tissue:root)11.913
SRR2967015Control (Tissue:root)11.588

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.241
SRR9715740Leave6.571
SRR9715741Leave8.415
SRR9715739Root1.504
SRR9715742Root8.950
SRR9715743Root8.956

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.844
SRR8749028MeJA induced 9h14.238
SRR8749029MeJA induced 9h11.299
SRR8749030Uninduced5.637
SRR8749031Uninduced7.415
SRR8749032Uninduced5.593

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.163
SRR8400027Control-Root12.211

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved