Gene detail information of Glyur000581s00027343.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G27070.12.00E-52tryptophan synthase beta-subunit 2
NRXP_009785268.13.59E-61PREDICTED: tryptophan synthase beta chain 1-like [Nicotiana sylvestris]
COGYP_007162924.13.00E-54tryptophan synthase subunit beta [Cyanobacterium aponinum PCC 10605]
Swissprottr|O50046|TRPB_CAMAC3.00E-62Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBLtr|A0A061F700|A0A061F700_THECC2.00E-61Tryptophan synthase beta-subunit 2 isoform 3 {ECO:0000313|EMBL:EOY12487.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005815082151606-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH85


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01696trpB EC:4.2.1.20 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0033925  mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000581s00027343.1PF03644.8Glyco_hydro_851192581.20E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.263
SRR1783600control3.442
SRR1783602moderate drought stress1.285
SRR1811619moderate drought stress1.157

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.405
DRR006520Root Summer glycyrrhizin high producing strain3.133
DRR006521Root Winter glycyrrhizin high producing strain1.674
DRR006522Root Winter glycyrrhizin high producing strain1.970
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.890
DRR006526Leaf Summer glycyrrhizin high producing strain0.786

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.379
SRR2868004Drought Stress(Tissue:root)0.109
SRR2967015Control (Tissue:root)0.065

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.534
SRR9715740Leave5.903
SRR9715741Leave2.410
SRR9715739Root0.491
SRR9715742Root3.199
SRR9715743Root2.744

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.361
SRR8749028MeJA induced 9h0.977
SRR8749029MeJA induced 9h0.039
SRR8749030Uninduced0.565
SRR8749031Uninduced0.390
SRR8749032Uninduced0.688

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.743
SRR8400027Control-Root5.686

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved