Gene detail information of Glyur000581s00027344.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27070.1 | 2.00E-30 | tryptophan synthase beta-subunit 2 |
| NR | KHG11167.1 | 1.34E-33 | Tryptophan synthase beta chain 2, chloroplastic [Gossypium arboreum] |
| COG | YP_001519094.1 | 2.00E-29 | tryptophan synthase subunit beta [Acaryochloris marina MBIC11017] |
| Swissprot | tr|O50046|TRPB_CAMAC | 3.00E-34 | Tryptophan synthase beta chain 2, chloroplastic (Precursor) |
| trEMBL | tr|I1N0T6|I1N0T6_SOYBN | 5.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G12090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00581 | 51619 | 52560 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01696 | trpB | EC:4.2.1.20 | Biosynthesis of amino acids | map01230 |
| Glycine, serine and threonine metabolism | map00260 | |||
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.141 |
| SRR1783600 | control | 11.619 |
| SRR1783602 | moderate drought stress | 4.724 |
| SRR1811619 | moderate drought stress | 3.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.940 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.864 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.728 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.476 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.016 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.654 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.264 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.181 |
| SRR2967015 | Control (Tissue:root) | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.650 |
| SRR9715740 | Leave | 3.314 |
| SRR9715741 | Leave | 2.535 |
| SRR9715739 | Root | 1.646 |
| SRR9715742 | Root | 4.796 |
| SRR9715743 | Root | 3.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.333 |
| SRR8749028 | MeJA induced 9h | 0.316 |
| SRR8749029 | MeJA induced 9h | 0.059 |
| SRR8749030 | Uninduced | 0.432 |
| SRR8749031 | Uninduced | 0.589 |
| SRR8749032 | Uninduced | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.098 |
| SRR8400027 | Control-Root | 7.133 |