Gene detail information of Glyur000581s00027345.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13570.15.00E-129decapping 2
NRKEH25691.10mRNA-decapping enzyme [Medicago truncatula]
COGYP_844363.11.00E-06NUDIX hydrolase [Syntrophobacter fumaroxidans MPOB]
Swissprottr|Q8GW31|DCP2_ARATH2.00E-161mRNA-decapping enzyme subunit 2
trEMBLtr|A0A072U8J7|A0A072U8J7_MEDTR0mRNA-decapping enzyme {ECO:0000313|EMBL:KEH25691.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005815574361370-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12613DCP2 EC:3.6.1.62 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003723  RNA binding

GO:0016787  hydrolase activity

GO:0030145  manganese ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000581s00027345.1PF05026.8DCP2191031.20E-28
Glyur000581s00027345.1PF00293.23NUDIX1102151.40E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.480
SRR1783600control28.680
SRR1783602moderate drought stress28.512
SRR1811619moderate drought stress28.411

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.858
DRR006520Root Summer glycyrrhizin high producing strain39.581
DRR006521Root Winter glycyrrhizin high producing strain50.878
DRR006522Root Winter glycyrrhizin high producing strain49.351
DRR006523Root Summer glycyrrhizin low producing strain54.730
DRR006524Root Summer glycyrrhizin low producing strain54.179
DRR006525Leaf Summer glycyrrhizin high producing strain16.774
DRR006526Leaf Summer glycyrrhizin high producing strain16.651

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.890
SRR2868004Drought Stress(Tissue:root)41.201
SRR2967015Control (Tissue:root)41.441

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.903
SRR9715740Leave18.326
SRR9715741Leave23.123
SRR9715739Root19.620
SRR9715742Root27.674
SRR9715743Root26.700

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.879
SRR8749028MeJA induced 9h33.973
SRR8749029MeJA induced 9h27.963
SRR8749030Uninduced20.512
SRR8749031Uninduced18.252
SRR8749032Uninduced20.639

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.907
SRR8400027Control-Root39.430

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved