Gene detail information of Glyur000581s00027353.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05280.1 | 1.00E-15 | RING/U-box superfamily protein |
| NR | KEH31413.1 | 4.11E-28 | RING-H2 zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q9FLC6|ATL73_ARATH | 3.00E-18 | RING-H2 finger protein ATL73 (Precursor) |
| trEMBL | tr|A0A072UQW5|A0A072UQW5_MEDTR | 2.00E-28 | RING-H2 zinc finger protein {ECO:0000313|EMBL:KEH31413.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00581 | 126462 | 138379 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000581s00027353.1 | PF13639.1 | zf-RING_2 | 15 | 58 | 3.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.082 |
| SRR1783600 | control | 0.050 |
| SRR1783602 | moderate drought stress | 0.027 |
| SRR1811619 | moderate drought stress | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.069 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.301 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.127 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.065 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.047 |
| SRR2967015 | Control (Tissue:root) | 0.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.091 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.075 |
| SRR8749028 | MeJA induced 9h | 0.046 |
| SRR8749029 | MeJA induced 9h | 0.024 |
| SRR8749030 | Uninduced | 0.028 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.122 |
| SRR8400027 | Control-Root | 0.162 |