Gene detail information of Glyur000583s00027210.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33260.1 | 4.00E-94 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_006589022.1 | 0 | PREDICTED: cell division cycle 20.5, cofactor of APC complex-like [Glycine max] |
| COG | YP_007154816.1 | 2.00E-26 | (Myosin heavy-chain) kinase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|Q9S7I8|CDC22_ARATH | 4.00E-116 | Cell division cycle 20.2, cofactor of APC complex |
| trEMBL | tr|K7LIT2|K7LIT2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G22635.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00583 | 69288 | 72980 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000583s00027210.1 | PF00400.27 | WD40 | 225 | 256 | 0.024 |
| Glyur000583s00027210.1 | PF00400.27 | WD40 | 271 | 303 | 2.40E-08 |
| Glyur000583s00027210.1 | PF00400.27 | WD40 | 312 | 351 | 1.10E-05 |
| Glyur000583s00027210.1 | PF00400.27 | WD40 | 416 | 445 | 0.00011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.082 |
| SRR1783600 | control | 0.155 |
| SRR1783602 | moderate drought stress | 0.042 |
| SRR1811619 | moderate drought stress | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.076 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.075 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.058 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.060 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.096 |
| SRR2967015 | Control (Tissue:root) | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.128 |
| SRR9715741 | Leave | 0.030 |
| SRR9715739 | Root | 0.169 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.027 |
| SRR8749028 | MeJA induced 9h | 0.030 |
| SRR8749029 | MeJA induced 9h | 0.043 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.107 |
| SRR8400027 | Control-Root | 0.103 |