Gene detail information of Glyur000583s00027212.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G51100.14.00E-86Fe superoxide dismutase 2
NRXP_004508271.19.44E-173PREDICTED: superoxide dismutase [Fe], chloroplastic-like [Cicer arietinum]
COGYP_007154683.11.00E-70Superoxide dismutase [Anabaena cylindrica PCC 7122]
Swissprottr|Q9LU64|SODF2_ARATH1.00E-125Superoxide dismutase [Fe] 2, chloroplastic (Precursor)
trEMBLtr|Q53D73|Q53D73_LOTJA7.00E-168Superoxide dismutase {ECO:0000256|RuleBase:RU000414}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005837340977418-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04564SOD2 EC:1.15.1.1 MAPK signaling pathway - fly map04013
FoxO signaling pathwaymap04068
Peroxisomemap04146
Longevity regulating pathway - mammalmap04211
Longevity regulating pathway - wormmap04212
Longevity regulating pathway - multiple speciesmap04213
Huntington's diseasemap05016


Gene Ontology

biological_process

GO:0006801  superoxide metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004784  superoxide dismutase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000583s00027212.1PF00081.17Sod_Fe_N581479.70E-26
Glyur000583s00027212.1PF02777.13Sod_Fe_C1522006.30E-13
Glyur000583s00027212.1PF02777.13Sod_Fe_C2072735.20E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.909
SRR1783600control14.607
SRR1783602moderate drought stress11.847
SRR1811619moderate drought stress10.880

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.215
DRR006520Root Summer glycyrrhizin high producing strain26.746
DRR006521Root Winter glycyrrhizin high producing strain3.762
DRR006522Root Winter glycyrrhizin high producing strain4.019
DRR006523Root Summer glycyrrhizin low producing strain27.640
DRR006524Root Summer glycyrrhizin low producing strain26.974
DRR006525Leaf Summer glycyrrhizin high producing strain38.002
DRR006526Leaf Summer glycyrrhizin high producing strain37.044

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.664
SRR2868004Drought Stress(Tissue:root)39.974
SRR2967015Control (Tissue:root)21.653

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.648
SRR9715740Leave69.610
SRR9715741Leave23.447
SRR9715739Root3.433
SRR9715742Root11.130
SRR9715743Root8.526

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.264
SRR8749028MeJA induced 9h3.194
SRR8749029MeJA induced 9h4.568
SRR8749030Uninduced0.358
SRR8749031Uninduced0.056
SRR8749032Uninduced0.308

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.433
SRR8400027Control-Root16.234

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved