Gene detail information of Glyur000585s00027749.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G18090.13.00E-1285'-3' exonuclease family protein
NRXP_004512789.10PREDICTED: exonuclease 1-like [Cicer arietinum]
COGYP_007308659.12.00E-11flap endonuclease 1 [Natronococcus occultus SP4]
Swissprottr|Q8L6Z7|EXO1_ARATH9.00E-77Exonuclease 1
trEMBLtr|A0A072TGL8|A0A072TGL8_MEDTR05'-3' exonuclease family protein {ECO:0000313|EMBL:KEH16709.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00585122204126519-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10746EXO1 EC:3.1.-.- Mismatch repair map03430


Gene Ontology

biological_process

GO:0006281  DNA repair


molecular_function

GO:0003677  DNA binding

GO:0003824  catalytic activity

GO:0004518  nuclease activity

GO:0005515  protein binding

GO:0016788  hydrolase activity, acting on ester bonds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000585s00027749.1PF00752.12XPG_N1372.90E-05
Glyur000585s00027749.1PF00752.12XPG_N43809.70E-06
Glyur000585s00027749.1PF00867.13XPG_I1192105.10E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.703
SRR1783600control0.613
SRR1783602moderate drought stress0.211
SRR1811619moderate drought stress0.187

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.720
DRR006520Root Summer glycyrrhizin high producing strain0.765
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.316
DRR006524Root Summer glycyrrhizin low producing strain0.328
DRR006525Leaf Summer glycyrrhizin high producing strain0.111
DRR006526Leaf Summer glycyrrhizin high producing strain0.083

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.365
SRR2868004Drought Stress(Tissue:root)0.715
SRR2967015Control (Tissue:root)0.695

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.273
SRR9715740Leave0.000
SRR9715741Leave0.178
SRR9715739Root0.000
SRR9715742Root0.091
SRR9715743Root0.056

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.605
SRR8749028MeJA induced 9h0.485
SRR8749029MeJA induced 9h0.367
SRR8749030Uninduced0.076
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.863
SRR8400027Control-Root1.142

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved