Gene detail information of Glyur000586s00021842.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G51550.11.00E-133Kelch repeat-containing F-box family protein
NRXP_004507024.10PREDICTED: F-box/kelch-repeat protein At1g51550-like [Cicer arietinum]
COGYP_006924736.14.00E-10PKD domain containing protein [Methanolobus psychrophilus R15]
Swissprottr|Q9C8K7|FBK21_ARATH0F-box/kelch-repeat protein At1g51550
trEMBLtr|A0A072UFY6|A0A072UFY6_MEDTR0F-box/kelch-repeat plant protein {ECO:0000313|EMBL:KEH28597.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005866603169632-


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000586s00021842.1PF13415.1Kelch_31782356.40E-08
Glyur000586s00021842.1PF13415.1Kelch_32382901.10E-08
Glyur000586s00021842.1PF13418.1Kelch_43413770.00027


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.845
SRR1783600control20.963
SRR1783602moderate drought stress40.235
SRR1811619moderate drought stress40.043

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain47.624
DRR006520Root Summer glycyrrhizin high producing strain47.274
DRR006521Root Winter glycyrrhizin high producing strain27.348
DRR006522Root Winter glycyrrhizin high producing strain26.454
DRR006523Root Summer glycyrrhizin low producing strain47.405
DRR006524Root Summer glycyrrhizin low producing strain48.077
DRR006525Leaf Summer glycyrrhizin high producing strain8.542
DRR006526Leaf Summer glycyrrhizin high producing strain8.523

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.060
SRR2868004Drought Stress(Tissue:root)25.154
SRR2967015Control (Tissue:root)23.310

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.348
SRR9715740Leave19.547
SRR9715741Leave16.246
SRR9715739Root23.795
SRR9715742Root20.502
SRR9715743Root22.485

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.587
SRR8749028MeJA induced 9h10.175
SRR8749029MeJA induced 9h5.986
SRR8749030Uninduced6.322
SRR8749031Uninduced3.444
SRR8749032Uninduced5.142

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.131
SRR8400027Control-Root25.028

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved