Gene detail information of Glyur000586s00021850.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G51600.22.00E-95ZIM-LIKE 2
NRXP_007142122.15.47E-180hypothetical protein PHAVU_008G254600g [Phaseolus vulgaris]
Swissprottr|Q8H1G0|GAT28_ARATH1.00E-133GATA transcription factor 28
trEMBLtr|V7BCC3|V7BCC3_PHAVU2.00E-180Uncharacterized protein {ECO:0000313|EMBL:ESW14116.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00586102573108623-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000586s00021850.1PF06200.9tify871161.60E-12
Glyur000586s00021850.1PF06203.9CCT1501932.10E-17
Glyur000586s00021850.1PF00320.22GATA2262624.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.539
SRR1783600control7.563
SRR1783602moderate drought stress12.144
SRR1811619moderate drought stress12.245

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.042
DRR006520Root Summer glycyrrhizin high producing strain16.232
DRR006521Root Winter glycyrrhizin high producing strain20.730
DRR006522Root Winter glycyrrhizin high producing strain20.358
DRR006523Root Summer glycyrrhizin low producing strain15.691
DRR006524Root Summer glycyrrhizin low producing strain15.819
DRR006525Leaf Summer glycyrrhizin high producing strain8.180
DRR006526Leaf Summer glycyrrhizin high producing strain7.862

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.731
SRR2868004Drought Stress(Tissue:root)14.867
SRR2967015Control (Tissue:root)17.870

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.547
SRR9715740Leave12.513
SRR9715741Leave13.345
SRR9715739Root5.749
SRR9715742Root10.114
SRR9715743Root8.520

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.818
SRR8749028MeJA induced 9h23.648
SRR8749029MeJA induced 9h20.913
SRR8749030Uninduced21.153
SRR8749031Uninduced15.571
SRR8749032Uninduced15.790

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.584
SRR8400027Control-Root13.470

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved