Gene detail information of Glyur000587s00026621.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G24640.10ubiquitin-specific protease 19
NRXP_004498826.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Cicer arietinum]
Swissprottr|Q9SJA1|UBP19_ARATH0Ubiquitin carboxyl-terminal hydrolase 19
trEMBLtr|I1MX24|I1MX24_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33650.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005876256467671+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000587s00026621.1PF01753.13zf-MYND701072.30E-09
Glyur000587s00026621.1PF00443.24UCH2065108.70E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.896
SRR1783600control4.926
SRR1783602moderate drought stress5.042
SRR1811619moderate drought stress4.883

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.637
DRR006520Root Summer glycyrrhizin high producing strain7.788
DRR006521Root Winter glycyrrhizin high producing strain9.200
DRR006522Root Winter glycyrrhizin high producing strain8.887
DRR006523Root Summer glycyrrhizin low producing strain9.981
DRR006524Root Summer glycyrrhizin low producing strain9.692
DRR006525Leaf Summer glycyrrhizin high producing strain7.340
DRR006526Leaf Summer glycyrrhizin high producing strain7.386

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.056
SRR2868004Drought Stress(Tissue:root)19.222
SRR2967015Control (Tissue:root)20.904

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.788
SRR9715740Leave12.409
SRR9715741Leave13.869
SRR9715739Root2.530
SRR9715742Root9.712
SRR9715743Root8.350

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.907
SRR8749028MeJA induced 9h7.183
SRR8749029MeJA induced 9h3.615
SRR8749030Uninduced6.623
SRR8749031Uninduced2.921
SRR8749032Uninduced3.149

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.906
SRR8400027Control-Root15.293

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved