Gene detail information of Glyur000587s00026622.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33160.1 | 9.00E-117 | F-box family protein |
| NR | NP_001240018.1 | 0 | uncharacterized protein LOC100801096 [Glycine max] |
| Swissprot | tr|Q9SMZ3|FBX13_ARATH | 8.00E-142 | F-box only protein 13 |
| trEMBL | tr|C6TD64|C6TD64_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00587 | 69329 | 71451 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000587s00026622.1 | PF00646.28 | F-box | 100 | 142 | 3.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.098 |
| SRR1783600 | control | 3.161 |
| SRR1783602 | moderate drought stress | 3.478 |
| SRR1811619 | moderate drought stress | 3.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.911 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.749 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.175 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.219 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.183 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.183 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.666 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.830 |
| SRR2967015 | Control (Tissue:root) | 15.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.091 |
| SRR9715740 | Leave | 3.108 |
| SRR9715741 | Leave | 2.731 |
| SRR9715739 | Root | 6.405 |
| SRR9715742 | Root | 6.177 |
| SRR9715743 | Root | 6.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.885 |
| SRR8749028 | MeJA induced 9h | 3.480 |
| SRR8749029 | MeJA induced 9h | 1.725 |
| SRR8749030 | Uninduced | 0.554 |
| SRR8749031 | Uninduced | 0.243 |
| SRR8749032 | Uninduced | 0.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.769 |
| SRR8400027 | Control-Root | 9.771 |