Gene detail information of Glyur000587s00026623.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20910.1 | 1.00E-105 | RING/U-box superfamily protein |
| NR | XP_003544578.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 1 [Glycine max] |
| Swissprot | tr|Q8RXD3|AIP2_ARATH | 3.00E-134 | E3 ubiquitin-protein ligase AIP2 |
| trEMBL | tr|I1M9B5|I1M9B5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G12380.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00587 | 72544 | 75256 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000587s00026623.1 | PF13639.1 | zf-RING_2 | 230 | 272 | 6.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.344 |
| SRR1783600 | control | 17.627 |
| SRR1783602 | moderate drought stress | 15.033 |
| SRR1811619 | moderate drought stress | 15.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.135 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.744 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.423 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.329 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.544 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.646 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.734 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.852 |
| SRR2868004 | Drought Stress(Tissue:root) | 46.125 |
| SRR2967015 | Control (Tissue:root) | 38.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 35.558 |
| SRR9715740 | Leave | 37.389 |
| SRR9715741 | Leave | 41.978 |
| SRR9715739 | Root | 16.443 |
| SRR9715742 | Root | 19.023 |
| SRR9715743 | Root | 19.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.669 |
| SRR8749028 | MeJA induced 9h | 45.853 |
| SRR8749029 | MeJA induced 9h | 42.822 |
| SRR8749030 | Uninduced | 35.497 |
| SRR8749031 | Uninduced | 36.430 |
| SRR8749032 | Uninduced | 30.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.585 |
| SRR8400027 | Control-Root | 28.577 |