Gene detail information of Glyur000588s00020460.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G13440.17.00E-136glyceraldehyde-3-phosphate dehydrogenase C2
NRNP_001240046.10uncharacterized protein LOC100782924 [Glycine max]
COGYP_004042509.14.00E-142glyceraldehyde-3-phosphate dehydrogenase [Paludibacter propionicigenes WB4]
Swissprottr|P04796|G3PC_SINAL0Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
trEMBLtr|C6TN36|C6TN36_SOYBN0Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00588137038140382+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00134GAPDH, gapA EC:1.2.1.12 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710
HIF-1 signaling pathwaymap04066
Alzheimer's diseasemap05010


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000588s00020460.1PF00044.19Gp_dh_N71579.80E-56
Glyur000588s00020460.1PF02800.15Gp_dh_C1882842.00E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control73.030
SRR1783600control71.255
SRR1783602moderate drought stress26.569
SRR1811619moderate drought stress26.055

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain136.223
DRR006520Root Summer glycyrrhizin high producing strain135.008
DRR006521Root Winter glycyrrhizin high producing strain321.572
DRR006522Root Winter glycyrrhizin high producing strain313.056
DRR006523Root Summer glycyrrhizin low producing strain92.557
DRR006524Root Summer glycyrrhizin low producing strain91.929
DRR006525Leaf Summer glycyrrhizin high producing strain28.544
DRR006526Leaf Summer glycyrrhizin high producing strain28.311

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)196.548
SRR2868004Drought Stress(Tissue:root)52.549
SRR2967015Control (Tissue:root)104.830

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.748
SRR9715740Leave30.044
SRR9715741Leave20.624
SRR9715739Root45.671
SRR9715742Root64.802
SRR9715743Root76.848

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h280.787
SRR8749028MeJA induced 9h399.786
SRR8749029MeJA induced 9h473.922
SRR8749030Uninduced477.799
SRR8749031Uninduced496.069
SRR8749032Uninduced629.992

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root125.307
SRR8400027Control-Root106.912

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved