Gene detail information of Glyur000592s00020584.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04140.1 | 0 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_004495044.1 | 0 | PREDICTED: uncharacterized protein LOC101511532 [Cicer arietinum] |
| COG | YP_007121393.1 | 2.00E-16 | WD40 repeat-containing protein [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 8.00E-12 | Protein Mut11 |
| trEMBL | tr|I1N9X4|I1N9X4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35370.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00592 | 22086 | 30027 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000592s00020584.3 | PF00400.27 | WD40 | 56 | 95 | 5.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.713 |
| SRR1783600 | control | 13.849 |
| SRR1783602 | moderate drought stress | 15.723 |
| SRR1811619 | moderate drought stress | 15.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.080 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.824 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.462 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.678 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.652 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.398 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.566 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.954 |
| SRR2967015 | Control (Tissue:root) | 16.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.322 |
| SRR9715740 | Leave | 8.173 |
| SRR9715741 | Leave | 9.022 |
| SRR9715739 | Root | 7.762 |
| SRR9715742 | Root | 17.448 |
| SRR9715743 | Root | 14.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.574 |
| SRR8749028 | MeJA induced 9h | 13.864 |
| SRR8749029 | MeJA induced 9h | 10.491 |
| SRR8749030 | Uninduced | 9.685 |
| SRR8749031 | Uninduced | 5.374 |
| SRR8749032 | Uninduced | 5.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.911 |
| SRR8400027 | Control-Root | 16.897 |