Gene detail information of Glyur000592s00020586.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04540.1 | 8.00E-156 | Beta-ketoacyl synthase |
| NR | KEH42448.1 | 0 | 3-oxoacyl-(acyl carrier) synthase II [Medicago truncatula] |
| COG | YP_421471.1 | 2.00E-141 | 3-oxoacyl-(acyl carrier protein) synthase II [Magnetospirillum magneticum AMB-1] |
| Swissprot | tr|Q8L3X9|KASM_ARATH | 0 | 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial (Precursor) |
| trEMBL | tr|A0A072VM15|A0A072VM15_MEDTR | 0 | 3-oxoacyl-(Acyl carrier) synthase II {ECO:0000313|EMBL:KEH42448.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00592 | 36942 | 41223 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09458 | fabF | EC:2.3.1.179 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 | |||
| Biotin metabolism | map00780 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000592s00020586.1 | PF00109.21 | ketoacyl-synt | 31 | 287 | 8.60E-51 |
| Glyur000592s00020586.1 | PF02801.17 | Ketoacyl-synt_C | 327 | 387 | 5.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.992 |
| SRR1783600 | control | 4.939 |
| SRR1783602 | moderate drought stress | 5.173 |
| SRR1811619 | moderate drought stress | 4.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.552 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.828 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.375 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.411 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.511 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.372 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.279 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.677 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.934 |
| SRR2967015 | Control (Tissue:root) | 7.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.489 |
| SRR9715740 | Leave | 6.113 |
| SRR9715741 | Leave | 3.261 |
| SRR9715739 | Root | 3.619 |
| SRR9715742 | Root | 3.654 |
| SRR9715743 | Root | 3.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.672 |
| SRR8749028 | MeJA induced 9h | 7.705 |
| SRR8749029 | MeJA induced 9h | 5.474 |
| SRR8749030 | Uninduced | 1.198 |
| SRR8749031 | Uninduced | 0.280 |
| SRR8749032 | Uninduced | 1.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.019 |
| SRR8400027 | Control-Root | 11.660 |