Gene detail information of Glyur000592s00020589.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43940.10GroES-like zinc-binding dehydrogenase family protein
NRKEH42454.10Zn-dependent alcohol dehydrogenase family, class III protein [Medicago truncatula]
COGYP_003147226.10S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069]
Swissprottr|P80572|ADHX_PEA0Alcohol dehydrogenase class-3
trEMBLtr|A0A072VKC1|A0A072VKC1_MEDTR0Zn-dependent alcohol dehydrogenase family, class III protein {ECO:0000313|EMBL:KEH42454.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005925139955950+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00121frmA, ADH5, adhC EC:1.1.1.284 1.1.1.1 Carbon metabolism map01200
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Methane metabolismmap00680
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982
Chemical carcinogenesismap05204


Gene Ontology

biological_process

GO:0006069  ethanol oxidation

GO:0055114  oxidation-reduction process


molecular_function

GO:0008270  zinc ion binding

GO:0016491  oxidoreductase activity

GO:0051903  S-(hydroxymethyl)glutathione dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000592s00020589.2PF08240.7ADH_N371602.10E-21
Glyur000592s00020589.2PF00107.21ADH_zinc_N2043238.60E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.691
SRR1783600control26.592
SRR1783602moderate drought stress54.701
SRR1811619moderate drought stress54.113

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.930
DRR006520Root Summer glycyrrhizin high producing strain40.324
DRR006521Root Winter glycyrrhizin high producing strain30.769
DRR006522Root Winter glycyrrhizin high producing strain29.452
DRR006523Root Summer glycyrrhizin low producing strain29.903
DRR006524Root Summer glycyrrhizin low producing strain30.010
DRR006525Leaf Summer glycyrrhizin high producing strain6.087
DRR006526Leaf Summer glycyrrhizin high producing strain6.019

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.214
SRR2868004Drought Stress(Tissue:root)85.998
SRR2967015Control (Tissue:root)103.251

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.369
SRR9715740Leave9.041
SRR9715741Leave14.043
SRR9715739Root37.408
SRR9715742Root29.690
SRR9715743Root32.054

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.531
SRR8749028MeJA induced 9h51.823
SRR8749029MeJA induced 9h58.335
SRR8749030Uninduced239.426
SRR8749031Uninduced309.889
SRR8749032Uninduced238.494

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.211
SRR8400027Control-Root39.032

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved