Gene detail information of Glyur000592s00020599.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33310.3 | 6.00E-45 | auxin-induced protein 13 |
| NR | XP_007144850.1 | 8.50E-139 | hypothetical protein PHAVU_007G189400g [Phaseolus vulgaris] |
| Swissprot | tr|Q38829|IAA11_ARATH | 1.00E-57 | Auxin-responsive protein IAA11 |
| trEMBL | tr|V7BG36|V7BG36_PHAVU | 3.00E-139 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00592 | 118651 | 122914 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000592s00020599.1 | PF02309.11 | AUX_IAA | 104 | 287 | 1.60E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.747 |
| SRR1783600 | control | 25.823 |
| SRR1783602 | moderate drought stress | 34.065 |
| SRR1811619 | moderate drought stress | 34.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.817 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.104 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 49.803 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 48.668 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 36.636 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.971 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.075 |
| SRR2868004 | Drought Stress(Tissue:root) | 54.479 |
| SRR2967015 | Control (Tissue:root) | 34.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 43.087 |
| SRR9715740 | Leave | 37.713 |
| SRR9715741 | Leave | 37.511 |
| SRR9715739 | Root | 16.453 |
| SRR9715742 | Root | 32.832 |
| SRR9715743 | Root | 30.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.743 |
| SRR8749028 | MeJA induced 9h | 153.857 |
| SRR8749029 | MeJA induced 9h | 118.404 |
| SRR8749030 | Uninduced | 29.213 |
| SRR8749031 | Uninduced | 51.106 |
| SRR8749032 | Uninduced | 61.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.573 |
| SRR8400027 | Control-Root | 46.327 |