Gene detail information of Glyur000593s00016422.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42520.10P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_004514158.10PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Cicer arietinum]
COGNP_355291.12.00E-95ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Swissprottr|Q84W89|RH37_ARATH0DEAD-box ATP-dependent RNA helicase 37
trEMBLtr|A0A072VUJ1|A0A072VUJ1_MEDTR0DEAD-box ATP-dependent RNA helicase-like protein {ECO:0000313|EMBL:KEH41770.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005931529620208-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11594DDX3X, bel EC:3.6.4.13 RIG-I-like receptor signaling pathway map04622
Viral carcinogenesismap05203
Hepatitis Bmap05161


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000593s00016422.2PF00270.24DEAD1713513.20E-45
Glyur000593s00016422.2PF00271.26Helicase_C4295017.30E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.991
SRR1783600control29.148
SRR1783602moderate drought stress22.008
SRR1811619moderate drought stress21.717

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.210
DRR006520Root Summer glycyrrhizin high producing strain39.815
DRR006521Root Winter glycyrrhizin high producing strain39.606
DRR006522Root Winter glycyrrhizin high producing strain38.891
DRR006523Root Summer glycyrrhizin low producing strain39.402
DRR006524Root Summer glycyrrhizin low producing strain39.256
DRR006525Leaf Summer glycyrrhizin high producing strain20.862
DRR006526Leaf Summer glycyrrhizin high producing strain20.550

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.635
SRR2868004Drought Stress(Tissue:root)31.264
SRR2967015Control (Tissue:root)39.480

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.254
SRR9715740Leave11.472
SRR9715741Leave15.805
SRR9715739Root8.592
SRR9715742Root23.907
SRR9715743Root19.124

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.409
SRR8749028MeJA induced 9h35.172
SRR8749029MeJA induced 9h35.300
SRR8749030Uninduced41.885
SRR8749031Uninduced53.502
SRR8749032Uninduced39.213

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.356
SRR8400027Control-Root39.586

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved