Gene detail information of Glyur000593s00016423.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G58500.1 | 3.00E-177 | protein phosphatase 2A-4 |
NR | XP_003533904.1 | 0 | PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit-like isoformX1 [Glycine max] |
COG | YP_001541554.1 | 1.00E-37 | metallophosphoesterase [Caldivirga maquilingensis IC-167] |
Swissprot | tr|P48578|PP2A3_ARATH | 0 | Serine/threonine-protein phosphatase PP2A-3 catalytic subunit |
trEMBL | tr|I1L2I7|I1L2I7_SOYBN | 0 | Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00593 | 30875 | 37231 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000593s00016423.1 | PF00149.23 | Metallophos | 56 | 248 | 6.50E-38 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 30.212 |
SRR1783600 | control | 30.870 |
SRR1783602 | moderate drought stress | 30.416 |
SRR1811619 | moderate drought stress | 30.288 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 33.112 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 33.393 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 23.210 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 22.602 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 27.729 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 27.321 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.697 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.609 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 30.739 |
SRR2868004 | Drought Stress(Tissue:root) | 33.389 |
SRR2967015 | Control (Tissue:root) | 26.480 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 20.460 |
SRR9715740 | Leave | 26.607 |
SRR9715741 | Leave | 22.913 |
SRR9715739 | Root | 14.400 |
SRR9715742 | Root | 20.821 |
SRR9715743 | Root | 15.424 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 15.764 |
SRR8749028 | MeJA induced 9h | 11.283 |
SRR8749029 | MeJA induced 9h | 7.039 |
SRR8749030 | Uninduced | 6.630 |
SRR8749031 | Uninduced | 1.714 |
SRR8749032 | Uninduced | 1.941 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 32.407 |
SRR8400027 | Control-Root | 33.478 |