Gene detail information of Glyur000593s00016425.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11980.1 | 3.00E-159 | Jojoba acyl CoA reductase-related male sterility protein |
| NR | KEH41771.1 | 0 | fatty acyl-CoA reductase-like protein [Medicago truncatula] |
| COG | YP_002433039.1 | 5.00E-49 | male sterility domain-containing protein [Desulfatibacillum alkenivorans AK-01] |
| Swissprot | tr|Q08891|FACR2_ARATH | 0 | Fatty acyl-CoA reductase 2 |
| trEMBL | tr|A0A072VJJ5|A0A072VJJ5_MEDTR | 0 | Fatty acyl-CoA reductase-like protein {ECO:0000313|EMBL:KEH41771.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00593 | 39370 | 42446 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13356 | FAR | EC:1.2.1.84 | Cutin, suberine and wax biosynthesis | map00073 |
| Peroxisome | map04146 | |||
| Longevity regulating pathway - worm | map04212 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000593s00016425.1 | PF07993.7 | NAD_binding_4 | 129 | 386 | 9.20E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.733 |
| SRR1783600 | control | 0.768 |
| SRR1783602 | moderate drought stress | 0.439 |
| SRR1811619 | moderate drought stress | 0.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.778 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.859 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.194 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.208 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.995 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.829 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.512 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.440 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.311 |
| SRR2967015 | Control (Tissue:root) | 3.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.319 |
| SRR9715740 | Leave | 4.532 |
| SRR9715741 | Leave | 0.733 |
| SRR9715739 | Root | 0.134 |
| SRR9715742 | Root | 0.767 |
| SRR9715743 | Root | 0.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.061 |
| SRR8749028 | MeJA induced 9h | 0.047 |
| SRR8749029 | MeJA induced 9h | 0.055 |
| SRR8749030 | Uninduced | 0.072 |
| SRR8749031 | Uninduced | 0.031 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.949 |
| SRR8400027 | Control-Root | 3.353 |