Gene detail information of Glyur000593s00016437.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G52820.14.00E-125WD-40 repeat family protein / notchless protein, putative
NRXP_007151989.10hypothetical protein PHAVU_004G092500g [Phaseolus vulgaris]
COGNP_927297.14.00E-32hypothetical protein gll4351 [Gloeobacter violaceus PCC 7421]
Swissprottr|Q9FLX9|NLE1_ARATH4.00E-154Notchless protein homolog
trEMBLtr|V7C3M9|V7C3M9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW23983.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00593135511140807+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000593s00016437.1PF08154.7NLE18794.60E-14
Glyur000593s00016437.1PF00400.27WD401071443.80E-11
Glyur000593s00016437.1PF00400.27WD401491862.00E-10
Glyur000593s00016437.1PF00400.27WD401972341.20E-06
Glyur000593s00016437.1PF00400.27WD402392751.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.038
SRR1783600control20.559
SRR1783602moderate drought stress27.559
SRR1811619moderate drought stress26.925

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.721
DRR006520Root Summer glycyrrhizin high producing strain26.558
DRR006521Root Winter glycyrrhizin high producing strain35.412
DRR006522Root Winter glycyrrhizin high producing strain34.795
DRR006523Root Summer glycyrrhizin low producing strain26.677
DRR006524Root Summer glycyrrhizin low producing strain26.143
DRR006525Leaf Summer glycyrrhizin high producing strain13.240
DRR006526Leaf Summer glycyrrhizin high producing strain12.829

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.689
SRR2868004Drought Stress(Tissue:root)29.097
SRR2967015Control (Tissue:root)32.044

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.768
SRR9715740Leave14.106
SRR9715741Leave15.929
SRR9715739Root10.374
SRR9715742Root30.790
SRR9715743Root26.480

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.988
SRR8749028MeJA induced 9h19.914
SRR8749029MeJA induced 9h10.706
SRR8749030Uninduced4.780
SRR8749031Uninduced4.765
SRR8749032Uninduced4.764

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.894
SRR8400027Control-Root23.801

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved