Gene detail information of Glyur000594s00025965.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46170.1 | 2.00E-135 | F-box family protein |
| NR | XP_003542943.1 | 0 | PREDICTED: F-box protein At5g46170-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FNK5|FB285_ARATH | 0 | F-box protein At5g46170 |
| trEMBL | tr|I1M1H8|I1M1H8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29140.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00594 | 47080 | 48285 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 78.475 |
| SRR1783600 | control | 79.356 |
| SRR1783602 | moderate drought stress | 99.478 |
| SRR1811619 | moderate drought stress | 96.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 104.156 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 101.518 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 82.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 81.178 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 103.323 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 101.769 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 60.707 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 54.893 |
| SRR2868004 | Drought Stress(Tissue:root) | 67.023 |
| SRR2967015 | Control (Tissue:root) | 75.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 73.258 |
| SRR9715740 | Leave | 70.254 |
| SRR9715741 | Leave | 83.129 |
| SRR9715739 | Root | 93.088 |
| SRR9715742 | Root | 99.027 |
| SRR9715743 | Root | 96.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.493 |
| SRR8749028 | MeJA induced 9h | 110.009 |
| SRR8749029 | MeJA induced 9h | 64.015 |
| SRR8749030 | Uninduced | 40.724 |
| SRR8749031 | Uninduced | 62.439 |
| SRR8749032 | Uninduced | 67.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 65.956 |
| SRR8400027 | Control-Root | 65.541 |