Gene detail information of Glyur000595s00018298.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68050.1 | 0 | flavin-binding, kelch repeat, f box 1 |
| NR | NP_001235886.1 | 0 | circadian clock-associated FKF1 [Glycine max] |
| COG | YP_325987.1 | 1.00E-21 | bacterio-opsin activator [Natronomonas pharaonis DSM 2160] |
| Swissprot | tr|Q9C9W9|ADO3_ARATH | 0 | Adagio protein 3 |
| trEMBL | tr|B9MST1|B9MST1_SOYBN | 0 | Circadian clock-associated FKF1 {ECO:0000313|EMBL:ABD28287.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00595 | 35241 | 38683 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000595s00018298.1 | PF13426.1 | PAS_9 | 74 | 179 | 2.70E-18 |
| Glyur000595s00018298.1 | PF00646.28 | F-box | 228 | 267 | 1.80E-05 |
| Glyur000595s00018298.1 | PF13418.1 | Kelch_4 | 322 | 373 | 5.90E-12 |
| Glyur000595s00018298.1 | PF13415.1 | Kelch_3 | 388 | 435 | 1.40E-11 |
| Glyur000595s00018298.1 | PF13415.1 | Kelch_3 | 437 | 488 | 1.40E-09 |
| Glyur000595s00018298.1 | PF07646.10 | Kelch_2 | 547 | 594 | 3.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.589 |
| SRR1783600 | control | 5.611 |
| SRR1783602 | moderate drought stress | 18.833 |
| SRR1811619 | moderate drought stress | 18.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.436 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 132.658 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 129.080 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.434 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.462 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.752 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.822 |
| SRR2967015 | Control (Tissue:root) | 29.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.631 |
| SRR9715740 | Leave | 2.156 |
| SRR9715741 | Leave | 0.802 |
| SRR9715739 | Root | 0.515 |
| SRR9715742 | Root | 2.369 |
| SRR9715743 | Root | 2.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.200 |
| SRR8749028 | MeJA induced 9h | 31.963 |
| SRR8749029 | MeJA induced 9h | 27.929 |
| SRR8749030 | Uninduced | 3.551 |
| SRR8749031 | Uninduced | 21.192 |
| SRR8749032 | Uninduced | 22.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.057 |
| SRR8400027 | Control-Root | 3.615 |