Gene detail information of Glyur000595s00018311.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24610.1 | 1.00E-180 | Rubisco methyltransferase family protein |
| NR | KHN16537.1 | 0 | Histone-lysine N-methyltransferase setd3 [Glycine soja] |
| trEMBL | tr|I1KQB1|I1KQB1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G05020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00595 | 102263 | 106513 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000595s00018311.1 | PF00856.23 | SET | 62 | 277 | 2.70E-09 |
| Glyur000595s00018311.1 | PF09273.6 | Rubis-subs-bind | 330 | 447 | 1.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.348 |
| SRR1783600 | control | 11.400 |
| SRR1783602 | moderate drought stress | 21.640 |
| SRR1811619 | moderate drought stress | 21.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.932 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.952 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.080 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.038 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.202 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.613 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.833 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.842 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.903 |
| SRR2967015 | Control (Tissue:root) | 11.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.741 |
| SRR9715740 | Leave | 9.616 |
| SRR9715741 | Leave | 9.634 |
| SRR9715739 | Root | 8.142 |
| SRR9715742 | Root | 15.631 |
| SRR9715743 | Root | 12.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.760 |
| SRR8749028 | MeJA induced 9h | 7.358 |
| SRR8749029 | MeJA induced 9h | 8.644 |
| SRR8749030 | Uninduced | 3.360 |
| SRR8749031 | Uninduced | 1.314 |
| SRR8749032 | Uninduced | 1.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.382 |
| SRR8400027 | Control-Root | 19.644 |