Gene detail information of Glyur000596s00021299.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07720.1 | 0 | Galactosyl transferase GMA12/MNN10 family protein |
| NR | KEH31956.1 | 0 | xyloglucan xylosyltransferase [Medicago truncatula] |
| Swissprot | tr|Q9LF80|GT3_ARATH | 0 | Putative glycosyltransferase 3 |
| trEMBL | tr|A0A072URH9|A0A072URH9_MEDTR | 0 | Xyloglucan xylosyltransferase {ECO:0000313|EMBL:KEH31956.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00596 | 3645 | 5012 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT34 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000596s00021299.1 | PF05637.7 | Glyco_transf_34 | 144 | 382 | 1.60E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.458 |
| SRR1783600 | control | 25.903 |
| SRR1783602 | moderate drought stress | 23.296 |
| SRR1811619 | moderate drought stress | 23.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 91.630 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 90.337 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.900 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.254 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 185.718 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 189.580 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.242 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 55.265 |
| SRR2868004 | Drought Stress(Tissue:root) | 60.868 |
| SRR2967015 | Control (Tissue:root) | 71.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 60.224 |
| SRR9715740 | Leave | 60.709 |
| SRR9715741 | Leave | 58.887 |
| SRR9715739 | Root | 113.725 |
| SRR9715742 | Root | 137.686 |
| SRR9715743 | Root | 128.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.815 |
| SRR8749028 | MeJA induced 9h | 82.824 |
| SRR8749029 | MeJA induced 9h | 70.943 |
| SRR8749030 | Uninduced | 99.049 |
| SRR8749031 | Uninduced | 56.451 |
| SRR8749032 | Uninduced | 79.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.373 |
| SRR8400027 | Control-Root | 59.099 |