Gene detail information of Glyur000596s00021306.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74410.1 | 1.00E-47 | RING/U-box superfamily protein |
| NR | XP_007155293.1 | 2.61E-125 | hypothetical protein PHAVU_003G188700g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LBA0|NIPL2_ARATH | 4.00E-70 | NEP1-interacting protein-like 2 |
| trEMBL | tr|V7CAS6|V7CAS6_PHAVU | 1.00E-125 | Uncharacterized protein {ECO:0000313|EMBL:ESW27287.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00596 | 16726 | 19815 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000596s00021306.1 | PF13639.1 | zf-RING_2 | 173 | 215 | 7.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.666 |
| SRR1783600 | control | 12.672 |
| SRR1783602 | moderate drought stress | 20.191 |
| SRR1811619 | moderate drought stress | 20.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.076 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.595 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 46.111 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.754 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.806 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.538 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.388 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.078 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.077 |
| SRR2967015 | Control (Tissue:root) | 32.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.741 |
| SRR9715740 | Leave | 32.651 |
| SRR9715741 | Leave | 28.354 |
| SRR9715739 | Root | 20.417 |
| SRR9715742 | Root | 16.509 |
| SRR9715743 | Root | 15.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.965 |
| SRR8749028 | MeJA induced 9h | 5.387 |
| SRR8749029 | MeJA induced 9h | 3.394 |
| SRR8749030 | Uninduced | 4.084 |
| SRR8749031 | Uninduced | 4.520 |
| SRR8749032 | Uninduced | 4.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.033 |
| SRR8400027 | Control-Root | 23.647 |