Gene detail information of Glyur000596s00021307.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G61410.22.00E-136D-ribulose-5-phosphate-3-epimerase
NRXP_004508723.10PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_007120506.14.00E-114ribulose-5-phosphate 3-epimerase [Microcoleus sp. PCC 7113]
Swissprottr|Q43157|RPE_SPIOL3.00E-179Ribulose-phosphate 3-epimerase, chloroplastic (Precursor)
trEMBLtr|V7CAX6|V7CAX6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW27289.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005962016925789-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01783rpe, RPE EC:5.1.3.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Pentose and glucuronate interconversionsmap00040
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016857  racemase and epimerase activity, acting on carbohydrates and derivatives


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000596s00021307.1PF00834.14Ribul_P_3_epim592593.10E-89


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.318
SRR1783600control19.752
SRR1783602moderate drought stress19.552
SRR1811619moderate drought stress18.123

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.341
DRR006520Root Summer glycyrrhizin high producing strain13.045
DRR006521Root Winter glycyrrhizin high producing strain20.477
DRR006522Root Winter glycyrrhizin high producing strain20.909
DRR006523Root Summer glycyrrhizin low producing strain14.804
DRR006524Root Summer glycyrrhizin low producing strain11.191
DRR006525Leaf Summer glycyrrhizin high producing strain365.323
DRR006526Leaf Summer glycyrrhizin high producing strain334.101

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.528
SRR2868004Drought Stress(Tissue:root)67.186
SRR2967015Control (Tissue:root)47.992

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave532.852
SRR9715740Leave598.140
SRR9715741Leave397.686
SRR9715739Root18.976
SRR9715742Root18.980
SRR9715743Root18.684

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.719
SRR8749028MeJA induced 9h61.956
SRR8749029MeJA induced 9h52.940
SRR8749030Uninduced79.797
SRR8749031Uninduced61.077
SRR8749032Uninduced63.711

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root43.773
SRR8400027Control-Root47.391

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved