Gene detail information of Glyur000596s00021319.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47500.1 | 3.00E-78 | cycling DOF factor 3 |
| NR | XP_003549682.1 | 0 | PREDICTED: cyclic dof factor 3 [Glycine max] |
| Swissprot | tr|Q8LFV3|CDF3_ARATH | 1.00E-129 | Cyclic dof factor 3 |
| trEMBL | tr|K7MKW7|K7MKW7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G10920.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00596 | 81226 | 84821 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000596s00021319.1 | PF02701.10 | zf-Dof | 131 | 191 | 9.20E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.075 |
| SRR1783600 | control | 2.055 |
| SRR1783602 | moderate drought stress | 6.883 |
| SRR1811619 | moderate drought stress | 7.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.880 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.790 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.791 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.899 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.821 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.776 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.118 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.322 |
| SRR2967015 | Control (Tissue:root) | 7.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.818 |
| SRR9715740 | Leave | 23.869 |
| SRR9715741 | Leave | 39.004 |
| SRR9715739 | Root | 1.350 |
| SRR9715742 | Root | 7.036 |
| SRR9715743 | Root | 6.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.513 |
| SRR8749028 | MeJA induced 9h | 7.526 |
| SRR8749029 | MeJA induced 9h | 3.313 |
| SRR8749030 | Uninduced | 0.795 |
| SRR8749031 | Uninduced | 0.737 |
| SRR8749032 | Uninduced | 0.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.681 |
| SRR8400027 | Control-Root | 16.077 |