Gene detail information of Glyur000596s00021324.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G74470.10Pyridine nucleotide-disulphide oxidoreductase family protein
NRAAD28640.20geranylgeranyl hydrogenase [Glycine max]
COGYP_007161931.10geranylgeranyl reductase [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q9ZS34|CHLP_TOBAC0Geranylgeranyl diphosphate reductase, chloroplastic (Precursor)
trEMBLtr|Q9XE94|Q9XE94_SOYBN0Geranylgeranyl hydrogenase {ECO:0000313|EMBL:AAD28640.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00596103350105542+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10960chlP, bchP EC:1.3.1.83 1.3.1.111 Porphyrin and chlorophyll metabolism map00860
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0015979  photosynthesis

GO:0015995  chlorophyll biosynthetic process

GO:0051188  cofactor biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016628  oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

GO:0045550  geranylgeranyl reductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000596s00021324.1PF07992.9Pyr_redox_2522141.80E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.752
SRR1783600control3.754
SRR1783602moderate drought stress3.782
SRR1811619moderate drought stress3.755

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.913
DRR006520Root Summer glycyrrhizin high producing strain2.887
DRR006521Root Winter glycyrrhizin high producing strain7.162
DRR006522Root Winter glycyrrhizin high producing strain6.947
DRR006523Root Summer glycyrrhizin low producing strain6.604
DRR006524Root Summer glycyrrhizin low producing strain6.678
DRR006525Leaf Summer glycyrrhizin high producing strain444.199
DRR006526Leaf Summer glycyrrhizin high producing strain441.478

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)56.910
SRR2868004Drought Stress(Tissue:root)55.043
SRR2967015Control (Tissue:root)31.280

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave326.535
SRR9715740Leave262.880
SRR9715741Leave242.185
SRR9715739Root7.439
SRR9715742Root26.110
SRR9715743Root20.599

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h63.063
SRR8749028MeJA induced 9h67.122
SRR8749029MeJA induced 9h41.159
SRR8749030Uninduced27.259
SRR8749031Uninduced7.162
SRR8749032Uninduced23.365

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.082
SRR8400027Control-Root28.074

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved