Gene detail information of Glyur000596s00021326.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G47520.13.00E-162malate dehydrogenase
NRAFK38950.10unknown [Lotus japonicus]
COGYP_003710793.13.00E-113malate dehydrogenase [Xenorhabdus nematophila ATCC 19061]
Swissprottr|Q9SN86|MDHP_ARATH0Malate dehydrogenase, chloroplastic (Precursor)
trEMBLtr|I3SFA8|I3SFA8_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK38950.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00596107885110232+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00026MDH2 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060  L-malate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000596s00021326.1PF00056.18Ldh_1_N992411.10E-47
Glyur000596s00021326.1PF02866.13Ldh_1_C2434081.60E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control37.968
SRR1783600control37.421
SRR1783602moderate drought stress21.590
SRR1811619moderate drought stress21.939

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain43.641
DRR006520Root Summer glycyrrhizin high producing strain43.083
DRR006521Root Winter glycyrrhizin high producing strain39.657
DRR006522Root Winter glycyrrhizin high producing strain38.662
DRR006523Root Summer glycyrrhizin low producing strain32.414
DRR006524Root Summer glycyrrhizin low producing strain32.409
DRR006525Leaf Summer glycyrrhizin high producing strain29.682
DRR006526Leaf Summer glycyrrhizin high producing strain29.246

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)99.388
SRR2868004Drought Stress(Tissue:root)55.122
SRR2967015Control (Tissue:root)48.443

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.772
SRR9715740Leave53.818
SRR9715741Leave49.931
SRR9715739Root50.138
SRR9715742Root59.192
SRR9715743Root61.102

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h61.628
SRR8749028MeJA induced 9h44.087
SRR8749029MeJA induced 9h33.995
SRR8749030Uninduced33.746
SRR8749031Uninduced15.627
SRR8749032Uninduced21.735

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root84.848
SRR8400027Control-Root67.996

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved