Gene detail information of Glyur000596s00021328.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18790.1 | 6.00E-35 | RWP-RK domain-containing protein |
| NR | XP_003525466.1 | 1.82E-135 | PREDICTED: protein RKD2-like [Glycine max] |
| Swissprot | tr|Q9M9U9|RKD1_ARATH | 5.00E-58 | Protein RKD1 |
| trEMBL | tr|V7CAU0|V7CAU0_PHAVU | 2.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW27302.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00596 | 114320 | 115513 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RWP-RK |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000596s00021328.1 | PF02042.10 | RWP-RK | 143 | 193 | 7.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.044 |
| SRR1783600 | control | 0.045 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.134 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.016 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.080 |
| SRR9715740 | Leave | 0.012 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.003 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.086 |
| SRR8749028 | MeJA induced 9h | 0.127 |
| SRR8749029 | MeJA induced 9h | 0.099 |
| SRR8749030 | Uninduced | 0.193 |
| SRR8749031 | Uninduced | 0.065 |
| SRR8749032 | Uninduced | 0.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.027 |
| SRR8400027 | Control-Root | 0.014 |