Gene detail information of Glyur000596s00021331.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28917.1 | 5.00E-19 | mini zinc finger 2 |
| NR | XP_004499446.1 | 7.13E-30 | PREDICTED: ZF-HD homeobox protein At4g24660-like [Cicer arietinum] |
| Swissprot | tr|Q9LJW5|MIF2_ARATH | 3.00E-27 | Mini zinc finger protein 2 |
| trEMBL | tr|B9T6Z4|B9T6Z4_RICCO | 2.00E-29 | Transcription factor, putative {ECO:0000313|EMBL:EEF28371.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00596 | 134035 | 134301 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000596s00021331.1 | PF04770.7 | ZF-HD_dimer | 33 | 84 | 1.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.356 |
| SRR1783600 | control | 0.500 |
| SRR1783602 | moderate drought stress | 1.177 |
| SRR1811619 | moderate drought stress | 1.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.122 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.497 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.972 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.846 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.627 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.590 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.025 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.603 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.401 |
| SRR2967015 | Control (Tissue:root) | 1.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.643 |
| SRR9715740 | Leave | 3.032 |
| SRR9715741 | Leave | 0.709 |
| SRR9715739 | Root | 0.292 |
| SRR9715742 | Root | 7.655 |
| SRR9715743 | Root | 5.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.611 |
| SRR8749028 | MeJA induced 9h | 2.569 |
| SRR8749029 | MeJA induced 9h | 1.697 |
| SRR8749030 | Uninduced | 1.347 |
| SRR8749031 | Uninduced | 1.734 |
| SRR8749032 | Uninduced | 1.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.542 |
| SRR8400027 | Control-Root | 3.309 |