Gene detail information of Glyur000597s00020330.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G20130.19.00E-128plastid transcriptionally active 14
NRXP_004487895.10PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform X2 [Cicer arietinum]
COGYP_007134424.15.00E-60RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria cyanosphaera PCC 7437]
Swissprottr|O22056|SIGB_ARATH2.00E-116RNA polymerase sigma factor sigB (Precursor)
trEMBLtr|I1L144|I1L144_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G05510.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00597112794118459+


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006352  DNA-templated transcription, initiation

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0005515  protein binding

GO:0016987  sigma factor activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000597s00020330.1PF00856.23SET803037.90E-17
Glyur000597s00020330.1PF04542.9Sigma70_r23233641.70E-07
Glyur000597s00020330.1PF04539.11Sigma70_r33774503.70E-16
Glyur000597s00020330.1PF04545.11Sigma70_r44635162.30E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.923
SRR1783600control6.724
SRR1783602moderate drought stress12.537
SRR1811619moderate drought stress12.443

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.842
DRR006520Root Summer glycyrrhizin high producing strain9.001
DRR006521Root Winter glycyrrhizin high producing strain8.032
DRR006522Root Winter glycyrrhizin high producing strain8.126
DRR006523Root Summer glycyrrhizin low producing strain10.923
DRR006524Root Summer glycyrrhizin low producing strain11.352
DRR006525Leaf Summer glycyrrhizin high producing strain25.941
DRR006526Leaf Summer glycyrrhizin high producing strain25.408

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.664
SRR2868004Drought Stress(Tissue:root)7.610
SRR2967015Control (Tissue:root)11.076

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.980
SRR9715740Leave47.787
SRR9715741Leave29.994
SRR9715739Root2.345
SRR9715742Root6.957
SRR9715743Root6.773

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.985
SRR8749028MeJA induced 9h14.730
SRR8749029MeJA induced 9h8.067
SRR8749030Uninduced4.783
SRR8749031Uninduced2.135
SRR8749032Uninduced3.731

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.994
SRR8400027Control-Root9.622

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved