Gene detail information of Glyur000597s00020332.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44270.11.00E-161repressor of lrx1
NRXP_003604078.10Cytoplasmic tRNA 2-thiolation protein [Medicago truncatula]
COGYP_004384968.13.00E-53hypothetical protein MCON_2761 [Methanosaeta concilii GP6]
Swissprottr|O64862|CTU1_ARATH0Cytoplasmic tRNA 2-thiolation protein 1 {ECO:0000255|HAMAP-Rule:MF_03053}
trEMBLtr|G7J985|G7J985_MEDTR0Cytoplasmic tRNA 2-thiolation protein 1 {ECO:0000256|HAMAP-Rule:MF_03053}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00597123629125855-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14168CTU1, NCS6 EC:2.7.7.- Sulfur relay system map04122


Gene Ontology

biological_process

GO:0002098  tRNA wobble uridine modification

GO:0008033  tRNA processing

GO:0034227  tRNA thio-modification


molecular_function

GO:0000049  tRNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000597s00020332.1PF01171.15ATP_bind_3612023.50E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.372
SRR1783600control39.877
SRR1783602moderate drought stress64.464
SRR1811619moderate drought stress64.969

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain49.997
DRR006520Root Summer glycyrrhizin high producing strain50.866
DRR006521Root Winter glycyrrhizin high producing strain91.313
DRR006522Root Winter glycyrrhizin high producing strain91.042
DRR006523Root Summer glycyrrhizin low producing strain94.744
DRR006524Root Summer glycyrrhizin low producing strain96.416
DRR006525Leaf Summer glycyrrhizin high producing strain26.057
DRR006526Leaf Summer glycyrrhizin high producing strain26.316

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.323
SRR2868004Drought Stress(Tissue:root)55.784
SRR2967015Control (Tissue:root)61.908

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.685
SRR9715740Leave37.781
SRR9715741Leave33.255
SRR9715739Root16.438
SRR9715742Root29.395
SRR9715743Root27.511

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h84.480
SRR8749028MeJA induced 9h73.638
SRR8749029MeJA induced 9h67.296
SRR8749030Uninduced77.831
SRR8749031Uninduced65.152
SRR8749032Uninduced98.822

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root50.984
SRR8400027Control-Root44.393

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved