Gene detail information of Glyur000598s00025081.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G15950.13.00E-117cinnamoyl coa reductase 1
NRAEV93474.11.62E-179cinnamoyl-CoA reductase [Caragana korshinskii]
COGYP_002015379.12.00E-33NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
Swissprottr|Q9S9N9|CCR1_ARATH6.00E-146Cinnamoyl-CoA reductase 1
trEMBLtr|V9I5Z3|V9I5Z3_9FABA6.00E-180Cinnamoyl-CoA reductase {ECO:0000313|EMBL:AEV93474.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005987527887-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09753CCR EC:1.2.1.44 Phenylpropanoid biosynthesis map00940


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0050662  coenzyme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000598s00025081.1PF01370.16Epimerase151614.90E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control72.488
SRR1783600control77.739
SRR1783602moderate drought stress62.675
SRR1811619moderate drought stress62.477

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain101.961
DRR006520Root Summer glycyrrhizin high producing strain101.761
DRR006521Root Winter glycyrrhizin high producing strain81.321
DRR006522Root Winter glycyrrhizin high producing strain79.021
DRR006523Root Summer glycyrrhizin low producing strain72.994
DRR006524Root Summer glycyrrhizin low producing strain82.394
DRR006525Leaf Summer glycyrrhizin high producing strain37.433
DRR006526Leaf Summer glycyrrhizin high producing strain37.706

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)199.425
SRR2868004Drought Stress(Tissue:root)200.258
SRR2967015Control (Tissue:root)172.009

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave133.486
SRR9715740Leave180.298
SRR9715741Leave264.075
SRR9715739Root71.342
SRR9715742Root166.587
SRR9715743Root141.443

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h114.901
SRR8749028MeJA induced 9h85.271
SRR8749029MeJA induced 9h76.087
SRR8749030Uninduced101.001
SRR8749031Uninduced88.818
SRR8749032Uninduced69.255

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root107.159
SRR8400027Control-Root65.924

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved